Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3470 176 8e-39 seq564 168 1e-36 >seq3470 Length=143118 Score = 176 bits (194), Expect = 8e-39 Identities = 560/862 (65%), Gaps = 34/862 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||| ||||| | |||| |||||| || || |||||||||||| Sbjct 117650 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 117591 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGA-GCAGCATT-TTC-TCAAG 25593 | ||||| | ||| |||| || | | ||| ||||| | | ||| ||| || Sbjct 117590 TCGAAGGATCTCCACGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTCA 117531 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || || ||||| || || |||||||| || |||| | Sbjct 117530 CACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCGC 117471 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | || |||||| | |||||| || |||||||| |||||||| || Sbjct 117470 TTCAGCTCTGAGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATG 117411 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTA--CAGACG 25768 || || | ||||| ||| ||| || ||||| || || ||||| | || | Sbjct 117410 GAGAACATCCACTCCGAGACATATTCC---CTTCTCATCGATACATACATCAGCGAGCCA 117354 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || | || | || ||||| ||||||||| |||| || ||||| ||||||| Sbjct 117353 AAGCAGCGA-ACAT-ACCTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGG 117296 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| || ||||| | ||| | | || || | | || || | | Sbjct 117295 CTGACTGGGCGTTGCGATGGATTTCTGACAAGAACTCGACATTCGCCCTCCGTCTCATCG 117236 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 | ||||| || || ||||||||||| ||| || || ||||| || ||||||||||| | Sbjct 117235 CATTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 117176 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || | | | || | |||| ||||||| || || |||||||||||| | | || ||| Sbjct 117175 AG-AAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAG 117117 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 || | |||| ||| || |||||||| || | | || || || |||| || Sbjct 117116 GGCATGCACACAGACTTCGCCTGCCTTCTGTTCTCG---CATCTGAAGAACAAGCCGAAC 117060 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 || | || | || ||||| | ||||| || ||| ||| ||||||| Sbjct 117059 CAGGCCCTTGTGCAGAGCATCATTACCGAGGCCGTCACGATTGAGCAGGAGTTCTTGACA 117000 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 |||| |||||| | |||||| ||||||||||| Sbjct 116999 GACGCTCTTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAA 116940 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGTACG 26241 | || ||||| | || |||| ||| ||||| | ||| |||||| ||| Sbjct 116939 TTCGTCGCCGATCGCCTACTGT------TGGCACTCGGCAACAAGAAGTTCTACA--ACG 116888 Query 26242 C--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | | ||||| |||||||| ||||| ||||| ||| ||| || |||||||||||||| | Sbjct 116887 CCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCG 116828 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||| | || ||||| || || Sbjct 116827 AGAAGCGTGTTGGCGAGTACCA 116806 >seq564 Length=57547 Score = 168 bits (186), Expect = 1e-36 Identities = 838/1315 (64%), Gaps = 47/1315 (4%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GCAGCGT 221429 ||| | |||||| |||||| | || || | |||| || || ||| | ||||| | Sbjct 7336 GTATGTCTCGTAAGGACCGAGCTTCTCAGCAAGCTCGCATGAA-GCCTCAAGAGCAGCAT 7278 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 | |||||||||||||| ||| ||||||| ||||||||| || || ||| |||| Sbjct 7277 GATAGATGGTCTCAAAAATCTGGATGTTGAGCTCCTTGGCCTCAGGCGAGTCGAATGGCA 7218 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 | || || | ||| | || || || || | || || | ||| ||||| | ||| | Sbjct 7217 TGCGGAGAGCCAAGAAGGCATCAGCAAGACCGTTGACACCAAGACCAATGGGTCGGTGGC 7158 Query 221550 TCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGA 221609 |||| || ||||| || || || |||||| ||||| ||||| | Sbjct 7157 GGAAGTTGCTCTTTCGTGCCTCTGGTACCGGGTAGTAGTTGATCTCGATGGTCTTGTTCA 7098 Query 221610 GGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA---CT 221666 |||| | |||| ||||| |||||| || |||| | | || ||| || Sbjct 7097 GGTTACGTGTGACCACTTTGGTGACCTCGTGAAGTTTCTTGAAGTCAAAAACCTCGTTCT 7038 Query 221667 CGCCGCCGTCGTGGAGGGGTTCCACAA-AAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 || | || ||| | ||| || | ||||| || ||||| || || Sbjct 7037 CGATGTCGACGTAGGTGGG---CAGAGCAAGCG--------AA-----GCCAGATTGCAG 6994 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || || ||||| ||| | |||| |||||||| || || | || || |||| Sbjct 6993 ACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCAGTGCACAAATTAGAGCTCTTG 6934 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 ||||| || || | || || || |||||| ||||| ||||||||||| || || || Sbjct 6933 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAA 6874 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || ||| ||||| ||| ||| | ||||| | ||| | || |||| || | || Sbjct 6873 GGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATATTT-TCTGAGCACGAAC 6815 Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCGGTATAGAGCATGTCAAACTTTT 221963 |||| | || || | | ||| | ||||| | || ||| | |||| | Sbjct 6814 CGTC----TCACGGCCCTTGCCTTCTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGT 6759 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCA-GTGCTTG 222022 ||||||| | || ||| || || || | ||| ||||| ||| |||| |||| | Sbjct 6758 CACCGTAGACATCCGACAGACCAGGGCATTCGTTGGGGCACATTAGAGTCCAAGTGCC-G 6700 Query 222023 TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTG 222082 || | || ||| | |||||| ||||| || || ||||| || || | || | ||| | Sbjct 6699 TTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGC 6640 Query 222083 GTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCG 222142 | || || ||| || | ||| || | || |||| |||| | | ||| ||| Sbjct 6639 GCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCG 6580 Query 222143 TGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACC 222202 ||||||||||| || |||| ||| | ||| || || ||||||||||||||||| | || | Sbjct 6579 TGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGGT-CAAC 6521 Query 222203 ATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTT 222261 | | ||| | |||| ||| || || | ||||| || ||||||||| ||||| Sbjct 6520 GTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTT 6461 Query 222262 GGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT----ACTGGCAGACATGCCGATAC 222317 ||||| |||||| | || ||||| | ||| || | ||| || |||| Sbjct 6460 TGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGTTGTGAACATGAAGA----CCAATAC 6405 Query 222318 CACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAG 222377 | || |||| || ||||||||||| || ||||||| ||||| ||| || || || Sbjct 6404 CGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTGTCGTAGATACCATCAATGC 6345 Query 222378 AGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGT 222437 ||| ||||| | | || || || || || | | ||| | | | || || || Sbjct 6344 TGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTGGGGTACCAGCAC 6285 Query 222438 TAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTA 222497 | || || || || || ||||| ||||| | ||||| | ||| ||||| | Sbjct 6284 TGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAGTTGTATGTCTCGA 6225 Query 222498 CGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATCTCATGTACATGTACTGG 222556 || | |||| ||||||||||| | | | | || | |||| ||| | || Sbjct 6224 TCGCTGCTTCAATGTCTTCCCCGTGAATGCCGACAGCCACA-CGCATGATCATCTGTTGC 6166 Query 222557 GGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAGGTACGATTTTTCCAGAGTCTTGA 222614 || ||||| || ||| | | | | ||| ||||| ||| ||||||||||||| Sbjct 6165 GGTCTCTCGGCA--ACCTTGCCATCAATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGA 6108 Query 222615 ACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC 222669 | || ||||| | | || ||||| | | | | || | ||| | || |||||| Sbjct 6107 AGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACAATGGCCGAGTTCAGCTC 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928803733449280