Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq2217 264 4e-66 seq2873 87.8 6e-13 >seq2217 Length=1057156 Score = 264 bits (292), Expect = 4e-66 Identities = 509/748 (68%), Gaps = 2/748 (0%) Strand=Plus/Minus Query 45438 TGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGATC 45497 |||| | ||||| || || | || || ||| | || ||||||||| | || | ||| | Sbjct 566893 TGAAGAACTATCTTGATTTATTACAGGATATCCTGGATAACGGCGTGCATAAGGGAGACC 566834 Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 | || ||||| || || || || || ||| | ||||| || | | || | || | Sbjct 566833 GCACCGGAACGGGAACCCAATCTGTTTTTGGCAGACAGCTCCGATATGACCTATCCGAAG 566774 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | |||||||| || || || || | ||| | || ||||| |||| || | | Sbjct 566773 GGTTCCCGCTTGTAACAACCAAGCGAATCCATCTGAAATCAGTCATTCATGAGTTGTTAT 566714 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||||| | || ||||||||| | |||| || |||| ||||| |||| ||| |||| Sbjct 566713 GGTTTTTGAGCGGGGATACGAATATATCCTATCTGAAGGAAAATGGCGTGAAGATCTGGG 566654 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 | || ||||| || ||||| || ||| | || || | ||||| | |||||||| | | Sbjct 566653 ATGATTGGGCTGACGAAAATGGTGATTTGGGTCCGGTATACGGATCTCAATGGCGCACTT 566594 Query 45738 GGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGC 45797 || ||| | | || | | | | || || ||||| || || || | ||| || Sbjct 566593 GGGAAGCACCCAATGGAGAGAAGATTGATCAGATTGCAGCTGTAATTGATTCAATTAAAA 566534 Query 45798 GCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAA 45857 ||| ||| | || || || || || ||||| ||||| ||||| || | | | Sbjct 566533 ACAATCCGGATTCACGACGTCACCTCGTTAGCGCCTGGAATGTGGCGGAGATTAACAACA 566474 Query 45858 TGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCAT 45917 |||| ||||||| || |||| ||| |||||||||||||| || | || | |||| Sbjct 566473 TGAAACTGCCCCCTTGCCATTTCGCGTTTCAGTTTTACGTGGCTGAGGGTAAACTATCAT 566414 Query 45918 GCATG-TGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGC 45976 | ||| | ||| |||||| || ||||| || || || |||| |||||||| || ||| Sbjct 566413 GTATGCTCACAAT-GCGTTCCGTGGATACGTTCCTGGGGCTGCCATTTAACATTGCCAGC 566355 Query 45977 TATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCATT 46036 ||||| |||||||||||||| ||||||| || || || || || || || || |||| Sbjct 566354 TATGCATTGTTGACACATATGATTGCCCAGCAGTGTGATCTTGAAGTGGGAGAGTTCATC 566295 Query 46037 TTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTG 46096 | |||| || || || || | ||| ||| ||| ||||||||| |||| ||| || Sbjct 566294 TGGTCCGGTGGGGATGTACACATCTACTCAAACCATGTGGAACAAGTGAAAACCCAGTTG 566235 Query 46097 ACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTT 46156 ||| || || | | |||| || || || ||||| || |||||| || || ||| Sbjct 566234 GAGCGTGAACCATACGCATTGCCTAAACTGGTCATCAAGCGTAAGCCGGATTCCATTTTT 566175 Query 46157 GACTATGAATACGAGGATTTTGAATTTG 46184 || ||| | || |||||||| |||| Sbjct 566174 GATTATACGTTTGAAGATTTTGAGTTTG 566147 >seq2873 Length=797338 Score = 87.8 bits (96), Expect = 6e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 35790 GTCCCGATCATTGTCCTGGCACAACTGAACCGGGCAGTGGAGCAAAGGGCGGACAAACGC 35849 || ||| | |||| | || | || |||| ||||| || |||||| | ||| ||||| Sbjct 54287 GTTCCGGTTATTGCCTTGTCTCAGCTGAGCCGGGGTGTAGAGCAACGTCAGGATAAACGT 54346 Query 35850 CCGACGATGGCAGACCTTCGAGAGTCGGGAAGCATCGAGCAAATTGCTGATTTGATTGCC 35909 |||| |||| ||| | || || |||||| ||||||||| |||||| | | || Sbjct 54347 CCGATGATGAGTGACTTGCGGGAATCGGGATCGATCGAGCAAGATGCTGACATCGTAGCG 54406 Query 35910 TTCCTGTACCGCGAGGACTATTACAATCGGGACGCTGAACAAACAGGAATCACAGAAATT 35969 ||||||||||| || ||||| || || | ||| | || | | | || | || ||| Sbjct 54407 TTCCTGTACCGGGATGACTACTATAACCAGGAGACCGAGAAGAAAAACATTATCGAGATT 54466 Query 35970 ATTGTTGCCAAAAACCGTAACGG 35992 ||| | |||||| | ||||| || Sbjct 54467 ATTATCGCCAAACAGCGTAATGG 54489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157743774187418