Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq222 100 2e-15 seq2105 89.7 3e-12 >seq222 Length=508843 Score = 100 bits (110), Expect = 2e-15 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 ||||||| || ||| |||||| | ||||| || || || ||||| || || ||||| Sbjct 290012 CATATCTGGGTCAAACGGTAACTCAAGCAGTTATCACGGTACCAGCTTACTTCAATGACA 289953 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 || ||||||||||| |||||||| || | ||| |||||||| | ||| | ||||| Sbjct 289952 GCCAGCGTCAAGCAACCAAAGATGCAGGTAAAATCGCAGGTCTGGAAGTTCTGCGTATCG 289893 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 | || || ||||||||||| || | || || ||| | || || Sbjct 289892 TCAACGAGCCAACAGCAGCAGCTTTGGCATACGGTATGGAGAA 289850 >seq2105 Length=340086 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || |||||||||||||| || || || || || |||||||| || || || || ||| Sbjct 294156 ACGGTTCCAGCATATTTCAACGACTCGCAGCGACAAGCAACAAAGGACGCCGGTCTCATT 294097 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || || || || | ||||| || ||||| ||||| ||||| || |||| || ||| Sbjct 294096 GCTGGCCTCAACGTCCTCCGTATCATCAATGAGCCAACTGCAGCAGCCATTGCCTACGGT 294037 Query 474866 CTTGATAAGAATTCTGA 474882 || || ||||| |||| Sbjct 294036 CTCGACAAGAAGACTGA 294020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268027480908476