Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3216 134 2e-25 seq963 131 2e-24 seq3470 114 2e-19 seq564 98.7 1e-14 seq465 98.7 1e-14 seq553 91.5 2e-12 >seq3216 Length=178887 Score = 134 bits (148), Expect = 2e-25 Identities = 141/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | |||||| || | ||| ||| | ||||| ||| | | || ||| Sbjct 20380 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 20322 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | | Sbjct 20321 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 20262 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | |||||||||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 20261 TCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAACATTCAGA 20202 Query 1592298 ACG 1592300 ||| Sbjct 20201 ACG 20199 >seq963 Length=36175 Score = 131 bits (144), Expect = 2e-24 Identities = 306/462 (66%), Gaps = 0/462 (0%) Strand=Plus/Minus Query 1573777 TCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACG 1573836 |||| || | |||||||| ||||| | | ||||||||||| ||||||||| | Sbjct 30864 TCCCTAGGGTTGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAA 30805 Query 1573837 CCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGG 1573896 || ||| |||| | | || || ||| ||||||| || | | | ||| Sbjct 30804 CCATCGAACGCCTCAAAATCATCGCCAAAGATGGCAACATGCCACACGTAATCATCTCGG 30745 Query 1573897 GTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCG 1573956 | |||||| | ||||| ||||| || || || ||||| ||||| || Sbjct 30744 GCATGCCCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGTC 30685 Query 1573957 CGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCG 1574016 | ||| | | || ||||| |||||||||||||| || ||||||||||| ||||||||| Sbjct 30684 CAGCCTACAAAGAAGCCGTCCTCGAACTCAACGCCTCCGACGAGCGCGGAATCGACGTCG 30625 Query 1574017 TGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACA 1574076 | || || ||||||| | ||| || | | || || || |||| || || | Sbjct 30624 TACGAAACCGCATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGCCGGGCGGCAGA 30565 Query 1574077 AGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGT 1574136 || | | || | ||||| || || || | || || | || |||||||| ||||| Sbjct 30564 AGATTGTAATTTTAGACGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGTC 30505 Query 1574137 CCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGA 1574196 || ||||||| ||| || |||||| ||||| ||| | || |||||| ||| | Sbjct 30504 GAACGATGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGCAACCAATCGAACA 30445 Query 1574197 TGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 |||||||| | |||||| |||||||| || | |||| Sbjct 30444 AAATCATCGAGCCTCTCCAATCGCGCTGCGCAATCTTACGCT 30403 >seq3470 Length=143118 Score = 114 bits (126), Expect = 2e-19 Identities = 175/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | ||||| || Sbjct 116800 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 116859 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | | ||||| | | Sbjct 116860 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAAC 116919 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| |||||||| || || ||||| || |||||||||| |||||||| || | Sbjct 116920 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 116979 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG---ACG 868927 ||| || || | || ||| ||||| | ||| ||| |||||||||| | | Sbjct 116980 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCAATCGTGACGGCCTCGGTAATG 117039 Query 868928 ATGATCTGC 868936 ||| ||||| Sbjct 117040 ATGCTCTGC 117048 Score = 107 bits (118), Expect = 2e-17 Identities = 176/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | | || Sbjct 117397 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGC 117456 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| || ||||| ||| |||||||| Sbjct 117457 ACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAG 117516 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||| ||| || ||||||||| ||| || ||||| | Sbjct 117517 AATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCG 117576 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || || || | |||||| || ||||||| |||||||||||||||||| Sbjct 117577 TGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTG 117636 Query 869870 TACATCTCCCATA 869882 ||||| | ||||| Sbjct 117637 TACATTTGCCATA 117649 Score = 91.5 bits (100), Expect = 2e-12 Identities = 117/157 (75%), Gaps = 11/157 (7%) Strand=Plus/Plus Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGA 869273 ||| |||| |||||| || || ||||| ||||| ||||| || ||| || | || |||| Sbjct 117150 GAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGAT-CCAGAGA 117208 Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333 | ||||||||||| ||||||||||| ||||||| || ||| || ||||||| | Sbjct 117209 AGAAGATGCCCTCAACGGCGGCAAATGCGATGAGACGGAGGGCGAA--TGTCGAG----T 117262 Query 869334 CCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTT 869367 ||||| ||||| || ||||||||| ||||| Sbjct 117263 TCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTT 117299 >seq564 Length=57547 Score = 98.7 bits (108), Expect = 1e-14 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 ||||||| || || ||||| | | ||| || || | ||| |||||| | ||| ||| Sbjct 7583 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 7524 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| | ||||| ||||||||| |||| ||| || ||||| |||| Sbjct 7523 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 7465 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511 ||||| ||||||||||||| ||||||| | ||| || || | | || ||| ||||||| Sbjct 7464 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 7406 Query 1627512 CCAGCGGCCG 1627521 |||| || || Sbjct 7405 CCAGAGGTCG 7396 Score = 95.1 bits (104), Expect = 1e-13 Identities = 201/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| |||| || ||||| || || || |||||||| Sbjct 6529 CTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTACAAGACCGTTGGA 6470 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| ||||| | | ||| | ||| | || | | ||||| | || || Sbjct 6469 TGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGTTGTGAACATGAAGACC 6410 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || ||||||||| | || || ||||| ||||||||||| || || Sbjct 6409 AATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTGTCGTAGATACCATC 6350 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||| |||| | ||||| || | |||| || | || || Sbjct 6349 AATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTGGGGTACC 6290 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || |||| || || |||| || ||||| ||| | ||||||| || ||| || Sbjct 6289 AGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAGTTGTATGT 6230 >seq465 Length=66527 Score = 98.7 bits (108), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| ||||| || ||||| |||||| |||||| || ||||||| || ||| Sbjct 17025 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 17084 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | || ||| | ||||| ||||||||||| || || || || Sbjct 17085 CCTTGCTTTGACAAATTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACG 17144 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201 || || ||||| ||||| ||| || |||| ||| Sbjct 17145 AAAGGCTTCGAATTTGGCTCCGGCTTCGGCGGATGC 17180 >seq553 Length=474549 Score = 91.5 bits (100), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| |||| Sbjct 423673 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 423614 Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049 |||||||||||||| | |||||| Sbjct 423613 GATAGGCGCGCATGATGATGCAAAG 423589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106848937216229