Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3216 134 2e-25
seq963 131 2e-24
seq3470 114 2e-19
seq564 98.7 1e-14
seq465 98.7 1e-14
seq553 91.5 2e-12
>seq3216
Length=178887
Score = 134 bits (148), Expect = 2e-25
Identities = 141/183 (77%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | |||||| || | ||| ||| | ||||| ||| | | || |||
Sbjct 20380 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 20322
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | |
Sbjct 20321 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 20262
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
| |||||||||||||||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 20261 TCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAACATTCAGA 20202
Query 1592298 ACG 1592300
|||
Sbjct 20201 ACG 20199
>seq963
Length=36175
Score = 131 bits (144), Expect = 2e-24
Identities = 306/462 (66%), Gaps = 0/462 (0%)
Strand=Plus/Minus
Query 1573777 TCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACG 1573836
|||| || | |||||||| ||||| | | ||||||||||| ||||||||| |
Sbjct 30864 TCCCTAGGGTTGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAA 30805
Query 1573837 CCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGG 1573896
|| ||| |||| | | || || ||| ||||||| || | | | |||
Sbjct 30804 CCATCGAACGCCTCAAAATCATCGCCAAAGATGGCAACATGCCACACGTAATCATCTCGG 30745
Query 1573897 GTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCG 1573956
| |||||| | ||||| ||||| || || || ||||| ||||| ||
Sbjct 30744 GCATGCCCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGTC 30685
Query 1573957 CGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCG 1574016
| ||| | | || ||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct 30684 CAGCCTACAAAGAAGCCGTCCTCGAACTCAACGCCTCCGACGAGCGCGGAATCGACGTCG 30625
Query 1574017 TGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACA 1574076
| || || ||||||| | ||| || | | || || || |||| || || |
Sbjct 30624 TACGAAACCGCATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGCCGGGCGGCAGA 30565
Query 1574077 AGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGT 1574136
|| | | || | ||||| || || || | || || | || |||||||| |||||
Sbjct 30564 AGATTGTAATTTTAGACGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGTC 30505
Query 1574137 CCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGA 1574196
|| ||||||| ||| || |||||| ||||| ||| | || |||||| ||| |
Sbjct 30504 GAACGATGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGCAACCAATCGAACA 30445
Query 1574197 TGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
|||||||| | |||||| |||||||| || | ||||
Sbjct 30444 AAATCATCGAGCCTCTCCAATCGCGCTGCGCAATCTTACGCT 30403
>seq3470
Length=143118
Score = 114 bits (126), Expect = 2e-19
Identities = 175/249 (70%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||||| || ||| |||||| |||||||||||||| | ||||| ||
Sbjct 116800 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 116859
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | | ||||| | |
Sbjct 116860 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAAC 116919
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| ||||| |||||||| || || ||||| || |||||||||| |||||||| || |
Sbjct 116920 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 116979
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG---ACG 868927
||| || || | || ||| ||||| | ||| ||| |||||||||| | |
Sbjct 116980 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCAATCGTGACGGCCTCGGTAATG 117039
Query 868928 ATGATCTGC 868936
||| |||||
Sbjct 117040 ATGCTCTGC 117048
Score = 107 bits (118), Expect = 2e-17
Identities = 176/253 (70%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| | |||| | | ||
Sbjct 117397 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGC 117456
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || | ||||||||| || ||||| ||| ||||||||
Sbjct 117457 ACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAG 117516
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
|| || |||||||| ||| ||| || ||||||||| ||| || ||||| |
Sbjct 117517 AATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCG 117576
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || || || | |||||| || ||||||| ||||||||||||||||||
Sbjct 117577 TGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTG 117636
Query 869870 TACATCTCCCATA 869882
||||| | |||||
Sbjct 117637 TACATTTGCCATA 117649
Score = 91.5 bits (100), Expect = 2e-12
Identities = 117/157 (75%), Gaps = 11/157 (7%)
Strand=Plus/Plus
Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGA 869273
||| |||| |||||| || || ||||| ||||| ||||| || ||| || | || ||||
Sbjct 117150 GAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGAT-CCAGAGA 117208
Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333
| ||||||||||| ||||||||||| ||||||| || ||| || ||||||| |
Sbjct 117209 AGAAGATGCCCTCAACGGCGGCAAATGCGATGAGACGGAGGGCGAA--TGTCGAG----T 117262
Query 869334 CCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTT 869367
||||| ||||| || ||||||||| |||||
Sbjct 117263 TCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTT 117299
>seq564
Length=57547
Score = 98.7 bits (108), Expect = 1e-14
Identities = 139/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
||||||| || || ||||| | | ||| || || | ||| |||||| | ||| |||
Sbjct 7583 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 7524
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| | ||||| ||||||||| |||| ||| || ||||| ||||
Sbjct 7523 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 7465
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511
||||| ||||||||||||| ||||||| | ||| || || | | || ||| |||||||
Sbjct 7464 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 7406
Query 1627512 CCAGCGGCCG 1627521
|||| || ||
Sbjct 7405 CCAGAGGTCG 7396
Score = 95.1 bits (104), Expect = 1e-13
Identities = 201/300 (67%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| |||| || ||||| || || || ||||||||
Sbjct 6529 CTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTACAAGACCGTTGGA 6470
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||| ||||| | | ||| | ||| | || | | ||||| | || ||
Sbjct 6469 TGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGTTGTGAACATGAAGACC 6410
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| ||||| || ||||||||| | || || ||||| ||||||||||| || ||
Sbjct 6409 AATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTGTCGTAGATACCATC 6350
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||||||| |||| | ||||| || | |||| || | || ||
Sbjct 6349 AATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTGGGGTACC 6290
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| |||| || || |||| || ||||| ||| | ||||||| || ||| ||
Sbjct 6289 AGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAGTTGTATGT 6230
>seq465
Length=66527
Score = 98.7 bits (108), Expect = 1e-14
Identities = 116/156 (74%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| ||||| || ||||| |||||| |||||| || ||||||| || |||
Sbjct 17025 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 17084
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||||||||| | || ||| | ||||| ||||||||||| || || || ||
Sbjct 17085 CCTTGCTTTGACAAATTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACG 17144
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201
|| || ||||| ||||| ||| || |||| |||
Sbjct 17145 AAAGGCTTCGAATTTGGCTCCGGCTTCGGCGGATGC 17180
>seq553
Length=474549
Score = 91.5 bits (100), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024
|||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| ||||
Sbjct 423673 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 423614
Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049
|||||||||||||| | ||||||
Sbjct 423613 GATAGGCGCGCATGATGATGCAAAG 423589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106848937216229
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |