Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1140 113 6e-20 seq2939 107 2e-18 seq3027 98.7 1e-15 seq1440 84.2 3e-11 >seq1140 Length=804 Score = 113 bits (124), Expect = 6e-20 Identities = 171/240 (71%), Gaps = 15/240 (6%) Strand=Plus/Plus Query 158074 TATGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTC 158133 ||||| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| ||||| Sbjct 552 TATGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTC 610 Query 158134 GAGTCCAACCTGAGTCGCCAGT-----CG-GTATGGCGGAATTGGTAGACGCGCCAGGTT 158187 ||| || | ||| || || | || || |||||||||||| |||||| | || | Sbjct 611 GAGCCCTTCATGACTCACCTTTATATGCGCGTGTGGCGGAATTGGCAGACGCACTAGACT 670 Query 158188 TAGGTTCTGGTGTCTTATGACGTGGAGGTTCAAGTCCTCTTACCGACACTCGCTCGAA-- 158245 |||| ||| | ||||| |||||||| ||||||||||| || || | | || Sbjct 671 TAGGATCTAGCGTCTT-TGACGTGGGGGTTCAAGTCCCTCCACGCGCATCCTTTATAAGC 729 Query 158246 -----TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGATCCCC 158300 | |||||| ||||||||| | |||| || || || |||| ||||||||| ||| Sbjct 730 GGACGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGATTCCC 789 >seq2939 Length=251760 Score = 107 bits (118), Expect = 2e-18 Identities = 168/237 (71%), Gaps = 15/237 (6%) Strand=Plus/Minus Query 158077 GACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAG 158136 || ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| |||||||| Sbjct 251760 GAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGAG 251702 Query 158137 TCCAACCTGAGTCGCCAGT-----CG-GTATGGCGGAATTGGTAGACGCGCCAGGTTTAG 158190 || | ||| || ||| || || |||||||||||| |||||| | || |||| Sbjct 251701 CCCTTCATGACTCACCATCATATGCGCGTGTGGCGGAATTGGCAGACGCACTAGACTTAG 251642 Query 158191 GTTCTGGTGTCTTATGACGTGGAGGTTCAAGTCCTCTTACCGACACTCGCTCGAA----- 158245 | ||| | ||||| |||||||| ||||||||||| || || | | || Sbjct 251641 GATCTAGCGTCTT-TGACGTGGGGGTTCAAGTCCCTCCACGCGCATCCTTTATAAGCGGA 251583 Query 158246 --TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGATCCCC 158300 | |||||| ||||||||| | |||| || || || |||| ||||||||| ||| Sbjct 251582 CGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGATTCCC 251526 >seq3027 Length=236980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/244 (70%), Gaps = 20/244 (8%) Strand=Plus/Minus Query 158076 TGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGA 158135 ||| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| ||||||| Sbjct 236803 TGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGA 236745 Query 158136 GTCCAACCTGAGTCGCCAGT--------CGGTA-TGGCGGAATTGGTAGACGCGCCAGGT 158186 | || | ||| || ||| | |||| |||||||||||| |||||||| ||| Sbjct 236744 GCCCTTCATGACTCACCATTATATTTTGCGGTCGTGGCGGAATTGGCAGACGCGCACGGT 236685 Query 158187 TTAGGTTCTGGTGTCTTA--TGACGTGGAGGTTCAAGTCCTCT-TACCG-ACACTCGCT- 158241 | |||| | ||| || ||||||||||| |||||||| |||| || | | Sbjct 236684 TCAGGTCCGTGTGGGCTAACCCCCGTGGAGGTTCGAGTCCTCTCGACCGCACCATATATT 236625 Query 158242 ---CGAA--TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGAT 158296 || | | |||||| ||||||||| | |||| || || || |||| ||||||||| Sbjct 236624 TTGCGGACGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGAT 236565 Query 158297 CCCC 158300 ||| Sbjct 236564 TCCC 236561 >seq1440 Length=381215 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 158065 TTAAAAAGATATGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGT 158124 ||| | | || || ||||||||||||| |||||||||||| ||||||||||| |||||| Sbjct 321113 TTATACATATTTGTCTCAGTAGCTCAGCAGGATAGAGCAACGGCCTTCTAAGCCGTCGGT 321172 Query 158125 CGTTGGTTCGAGTCCAACCTG 158145 || ||||||| ||| |||| Sbjct 321173 CGGGGGTTCGAATCCCTCCTG 321193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614590426219360