Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq1140 113 6e-20
seq2939 107 2e-18
seq3027 98.7 1e-15
seq1440 84.2 3e-11
>seq1140
Length=804
Score = 113 bits (124), Expect = 6e-20
Identities = 171/240 (71%), Gaps = 15/240 (6%)
Strand=Plus/Plus
Query 158074 TATGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTC 158133
||||| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| |||||
Sbjct 552 TATGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTC 610
Query 158134 GAGTCCAACCTGAGTCGCCAGT-----CG-GTATGGCGGAATTGGTAGACGCGCCAGGTT 158187
||| || | ||| || || | || || |||||||||||| |||||| | || |
Sbjct 611 GAGCCCTTCATGACTCACCTTTATATGCGCGTGTGGCGGAATTGGCAGACGCACTAGACT 670
Query 158188 TAGGTTCTGGTGTCTTATGACGTGGAGGTTCAAGTCCTCTTACCGACACTCGCTCGAA-- 158245
|||| ||| | ||||| |||||||| ||||||||||| || || | | ||
Sbjct 671 TAGGATCTAGCGTCTT-TGACGTGGGGGTTCAAGTCCCTCCACGCGCATCCTTTATAAGC 729
Query 158246 -----TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGATCCCC 158300
| |||||| ||||||||| | |||| || || || |||| ||||||||| |||
Sbjct 730 GGACGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGATTCCC 789
>seq2939
Length=251760
Score = 107 bits (118), Expect = 2e-18
Identities = 168/237 (71%), Gaps = 15/237 (6%)
Strand=Plus/Minus
Query 158077 GACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAG 158136
|| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| ||||||||
Sbjct 251760 GAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGAG 251702
Query 158137 TCCAACCTGAGTCGCCAGT-----CG-GTATGGCGGAATTGGTAGACGCGCCAGGTTTAG 158190
|| | ||| || ||| || || |||||||||||| |||||| | || ||||
Sbjct 251701 CCCTTCATGACTCACCATCATATGCGCGTGTGGCGGAATTGGCAGACGCACTAGACTTAG 251642
Query 158191 GTTCTGGTGTCTTATGACGTGGAGGTTCAAGTCCTCTTACCGACACTCGCTCGAA----- 158245
| ||| | ||||| |||||||| ||||||||||| || || | | ||
Sbjct 251641 GATCTAGCGTCTT-TGACGTGGGGGTTCAAGTCCCTCCACGCGCATCCTTTATAAGCGGA 251583
Query 158246 --TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGATCCCC 158300
| |||||| ||||||||| | |||| || || || |||| ||||||||| |||
Sbjct 251582 CGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGATTCCC 251526
>seq3027
Length=236980
Score = 98.7 bits (108), Expect = 1e-15
Identities = 172/244 (70%), Gaps = 20/244 (8%)
Strand=Plus/Minus
Query 158076 TGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGA 158135
||| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| |||||||
Sbjct 236803 TGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGA 236745
Query 158136 GTCCAACCTGAGTCGCCAGT--------CGGTA-TGGCGGAATTGGTAGACGCGCCAGGT 158186
| || | ||| || ||| | |||| |||||||||||| |||||||| |||
Sbjct 236744 GCCCTTCATGACTCACCATTATATTTTGCGGTCGTGGCGGAATTGGCAGACGCGCACGGT 236685
Query 158187 TTAGGTTCTGGTGTCTTA--TGACGTGGAGGTTCAAGTCCTCT-TACCG-ACACTCGCT- 158241
| |||| | ||| || ||||||||||| |||||||| |||| || | |
Sbjct 236684 TCAGGTCCGTGTGGGCTAACCCCCGTGGAGGTTCGAGTCCTCTCGACCGCACCATATATT 236625
Query 158242 ---CGAA--TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGAT 158296
|| | | |||||| ||||||||| | |||| || || || |||| |||||||||
Sbjct 236624 TTGCGGACGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGAT 236565
Query 158297 CCCC 158300
|||
Sbjct 236564 TCCC 236561
>seq1440
Length=381215
Score = 84.2 bits (92), Expect = 3e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 158065 TTAAAAAGATATGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGT 158124
||| | | || || ||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 321113 TTATACATATTTGTCTCAGTAGCTCAGCAGGATAGAGCAACGGCCTTCTAAGCCGTCGGT 321172
Query 158125 CGTTGGTTCGAGTCCAACCTG 158145
|| ||||||| ||| ||||
Sbjct 321173 CGGGGGTTCGAATCCCTCCTG 321193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 614590426219360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |