Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1140 111 2e-19 seq2939 107 2e-18 seq3027 98.7 1e-15 seq1440 82.4 9e-11 >seq1140 Length=804 Score = 111 bits (122), Expect = 2e-19 Identities = 170/239 (71%), Gaps = 15/239 (6%) Strand=Plus/Plus Query 154256 ATGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCG 154315 |||| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| |||||| Sbjct 553 ATGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCG 611 Query 154316 AGTCCAACCTGAGTCGCCAGT-----CG-GTATGGCGGAATTGGTAGACGCGCCAGGTTT 154369 || || | ||| || || | || || |||||||||||| |||||| | || || Sbjct 612 AGCCCTTCATGACTCACCTTTATATGCGCGTGTGGCGGAATTGGCAGACGCACTAGACTT 671 Query 154370 AGGTTCTGGTGTCTTATGACGTGGAGGTTCAAGTCCTCTTACCGACACTCGCTCGAA--- 154426 ||| ||| | ||||| |||||||| ||||||||||| || || | | || Sbjct 672 AGGATCTAGCGTCTT-TGACGTGGGGGTTCAAGTCCCTCCACGCGCATCCTTTATAAGCG 730 Query 154427 ----TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGATCCCC 154481 | |||||| ||||||||| | |||| || || || |||| ||||||||| ||| Sbjct 731 GACGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGATTCCC 789 >seq2939 Length=251760 Score = 107 bits (118), Expect = 2e-18 Identities = 168/237 (71%), Gaps = 15/237 (6%) Strand=Plus/Minus Query 154258 GACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGAG 154317 || ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| |||||||| Sbjct 251760 GAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGAG 251702 Query 154318 TCCAACCTGAGTCGCCAGT-----CG-GTATGGCGGAATTGGTAGACGCGCCAGGTTTAG 154371 || | ||| || ||| || || |||||||||||| |||||| | || |||| Sbjct 251701 CCCTTCATGACTCACCATCATATGCGCGTGTGGCGGAATTGGCAGACGCACTAGACTTAG 251642 Query 154372 GTTCTGGTGTCTTATGACGTGGAGGTTCAAGTCCTCTTACCGACACTCGCTCGAA----- 154426 | ||| | ||||| |||||||| ||||||||||| || || | | || Sbjct 251641 GATCTAGCGTCTT-TGACGTGGGGGTTCAAGTCCCTCCACGCGCATCCTTTATAAGCGGA 251583 Query 154427 --TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGATCCCC 154481 | |||||| ||||||||| | |||| || || || |||| ||||||||| ||| Sbjct 251582 CGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGATTCCC 251526 >seq3027 Length=236980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/244 (70%), Gaps = 20/244 (8%) Strand=Plus/Minus Query 154257 TGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGA 154316 ||| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| ||||||| Sbjct 236803 TGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGA 236745 Query 154317 GTCCAACCTGAGTCGCCAGT--------CGGTA-TGGCGGAATTGGTAGACGCGCCAGGT 154367 | || | ||| || ||| | |||| |||||||||||| |||||||| ||| Sbjct 236744 GCCCTTCATGACTCACCATTATATTTTGCGGTCGTGGCGGAATTGGCAGACGCGCACGGT 236685 Query 154368 TTAGGTTCTGGTGTCTTA--TGACGTGGAGGTTCAAGTCCTCT-TACCG-ACACTCGCT- 154422 | |||| | ||| || ||||||||||| |||||||| |||| || | | Sbjct 236684 TCAGGTCCGTGTGGGCTAACCCCCGTGGAGGTTCGAGTCCTCTCGACCGCACCATATATT 236625 Query 154423 ---CGAA--TAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGAT 154477 || | | |||||| ||||||||| | |||| || || || |||| ||||||||| Sbjct 236624 TTGCGGACGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCGAT 236565 Query 154478 CCCC 154481 ||| Sbjct 236564 TCCC 236561 >seq1440 Length=381215 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 154257 TGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGA 154316 || ||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||| Sbjct 321124 TGTCTCAGTAGCTCAGCAGGATAGAGCAACGGCCTTCTAAGCCGTCGGTCGGGGGTTCGA 321183 Query 154317 GTCCAACCTG 154326 ||| |||| Sbjct 321184 ATCCCTCCTG 321193 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 154255 CATGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTC 154314 |||| ||||||||||||| ||||||||||||| ||||||||| |||||||| ||||| Sbjct 328854 CATGTCTCAGTAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTCGGTCGGGGGTTC 328795 Query 154315 GAGTCCAACCTGAGTCGCCA 154334 || ||| |||| | || || Sbjct 328794 GAATCCCTCCTGGGACGTCA 328775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605982806800560