Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2105 145 2e-29 seq222 122 3e-22 seq2971 109 2e-18 seq2765 107 6e-18 >seq2105 Length=340086 Score = 145 bits (160), Expect = 2e-29 Identities = 469/726 (65%), Gaps = 3/726 (0%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || ||||| || ||||| || || ||||| || | | | | | ||||||| Sbjct 294573 GCAATTGGTATCGACTTGGGTACCACGTACTCTTGCGTGGGTATCTTCAGAGATGATCGC 294514 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || ||||| || ||| | ||||| || |||| ||| || || || Sbjct 294513 ATTGAGATCATCGCCAACGATCAGGGCAACCGCACAACACCCTCATTCGTCGCCTTCACA 294454 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||| |||||| | || || || || | || || ||| ||| Sbjct 294453 GACACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCAGCAAAC 294394 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || || || |||||| | || || | | || ||| | ||| | Sbjct 294393 ACAGTCTTCGACGCAAAGCGATTGATCGGCCGCAAGTTCCAAGACGCAGAGGTGCAAGCA 294334 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || || || || | || | | | ||| | || || ||| | || | Sbjct 294333 GACATGAAGCACTTCCCCTTCAAGGTCAT-CGAGAAGGC--TGGCAAGCCAGTCATCTCG 294277 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || || | || || || | || || || ||| || || || || | ||| | | Sbjct 294276 GTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCCGCCATGATCCTC 294217 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | || || | || | |||| || || | | || || | Sbjct 294216 ACAAAGATGCGTGAGACCGCAGAGTCGTACCTTGGTGGCACCGTCAACAACGCCGTCGTC 294157 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || ||||| ||||| || || | ||||| |||||||| || || || |||| Sbjct 294156 ACGGTTCCAGCATATTTCAACGACTCGCAGCGACAAGCAACAAAGGACGCCGGTCTCATT 294097 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || ||||| || ||||| ||||| ||||| || || Sbjct 294096 GCTGGCCTCAACGTCCTCCGTATCATCAATGAGCCAACTGCAGCAGCCATTGCCTACGGT 294037 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | || ||| || ||| | || || || ||| | ||||||||||| Sbjct 294036 CTCGACAAGAAGACTGAGGGCGAGCGCAATGTGCTCATCTTCGATCTTGGTGGTGGTACC 293977 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || ||| | || ||||| ||||| || || || | ||||||||| Sbjct 293976 TTCGATGTGTCGCTGCTCACAATCGAGGAGGGTATTTTCGAGGTCAAGTCCACTGCTGGT 293917 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || || || || || || || || ||| Sbjct 293916 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTTGTCAACCACTTCGTAAACGAA 293857 Query 349919 TTTAAG 349924 |||||| Sbjct 293856 TTTAAG 293851 >seq222 Length=508843 Score = 122 bits (134), Expect = 3e-22 Identities = 214/312 (69%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 ||||||||||||| | ||| |||| |||||| | || ||||| || |||||||| || || Sbjct 290020 TGCTGAAGCATATCTGGGTCAAACGGTAACTCAAGCAGTTATCACGGTACCAGCTTACTT 289961 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 ||||| ||||||| ||||| |||||||| || | || || || | | ||||| Sbjct 289960 CAATGACAGCCAGCGTCAAGCAACCAAAGATGCAGGTAAAATCGCAGGTCTGGAAGTTCT 289901 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755 | || | || || || || || ||||| | ||||| || | || ||| Sbjct 289900 GCGTATCGTCAACGAGCCAACAGCAGCAGCTTTGGCATACGGTATGGAGAAA------TC 289847 Query 349756 CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACT 349815 | |||| ||| ||||| | | ||| || ||||| ||||| || || ||||| | || Sbjct 289846 CGAAGACCAAACGATTCTCGTATATGACTTGGGTGGCGGTACATTCGACGTATCCATCCT 289787 Query 349816 AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 ||| | || || | || ||||||||||| || ||||||| || || ||||| Sbjct 289786 TGAACTGGGTGACGGCTTCTTCGAAGTTAAAGCGACCAGCGGTGATAACCAACTGGGTGG 289727 Query 349876 AGAAGATTTTGA 349887 || || ||||| Sbjct 289726 CGATGACTTTGA 289715 >seq2971 Length=246349 Score = 109 bits (120), Expect = 2e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||| ||| || || || || || || Sbjct 199918 CATACCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 199859 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || || || | |||||||| ||||| Sbjct 199858 GGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGG 199799 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||||| ||||| |||||||| || || ||| || |||||||| || | || || | | Sbjct 199798 TGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTCACATTATCGATGGTGTCGGACGACT 199740 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 |||| || || |||| ||||| ||||| | ||| Sbjct 199739 CAACCTCGAGGGTAATGGTCTTGCCGGTGACTGT 199706 Score = 104 bits (114), Expect = 7e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || ||||| || ||||| || || || | Sbjct 200150 TTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGT 200091 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || ||||| || || || ||||| | Sbjct 200090 AGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGT 200031 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || ||||| || || | || ||||| || || | || | || Sbjct 200030 CAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTC-GCTG 199972 Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 199971 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 199916 >seq2765 Length=312026 Score = 107 bits (118), Expect = 6e-18 Identities = 245/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| | ||||| ||| | | | || ||||||||| | || || |||| | Sbjct 265034 CCAGAAGAGGTCTCATCCATGATCCTGGGCAAGATGAAGGAAGTCGCCGAGTCATACCTC 265093 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || |||| || || | || || | || || |||||||| || || || ||||||||| Sbjct 265094 GGCGAAAAGGTCACCAACGCAGTCGTCACAGTCCCAGCCTACTTCAACGACGCCCAGCGT 265153 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 | || || || || ||||||| || || || | || || || | | | || ||| Sbjct 265154 GCCGCTACCAAGGACGCTGGCACGATCGCCGGTCTCAACGTCCTCCGTGTCGTCAACGAA 265213 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || || || || | || || || || || || || ||| | ||| | || Sbjct 265214 CCTACCGCCGCCGCTCTCGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 265270 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | || | |||||||||||||| ||||| || | | || | || |||| Sbjct 265271 ATTGTCTACGACCTTGGTGGTGGTACTTTCGATGTCTCCATCTTGACTGTCGACCAGGGT 265330 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || ||| | ||||| || ||||| || ||||||||||| || ||||| || | Sbjct 265331 GTGTTCGAGGTTCAGGCAACGGCCGGTGACACCCATCTTGGTGGTGAGGATTTCGACCAG 265390 Query 349892 CGTCTCGT 349899 ||| |||| Sbjct 265391 CGTGTCGT 265398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515185731985211