Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2105 145 2e-29
seq222 122 3e-22
seq2971 109 2e-18
seq2765 107 6e-18
>seq2105
Length=340086
Score = 145 bits (160), Expect = 2e-29
Identities = 469/726 (65%), Gaps = 3/726 (0%)
Strand=Plus/Minus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
|| || || ||||| || ||||| || || ||||| || | | | | | |||||||
Sbjct 294573 GCAATTGGTATCGACTTGGGTACCACGTACTCTTGCGTGGGTATCTTCAGAGATGATCGC 294514
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
| || || || || || ||||| || ||| | ||||| || |||| ||| || || ||
Sbjct 294513 ATTGAGATCATCGCCAACGATCAGGGCAACCGCACAACACCCTCATTCGTCGCCTTCACA 294454
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || |||||| |||| |||||| | || || || || | || || ||| |||
Sbjct 294453 GACACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCAGCAAAC 294394
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438
|| || || || || |||||| | || || | | || ||| | ||| |
Sbjct 294393 ACAGTCTTCGACGCAAAGCGATTGATCGGCCGCAAGTTCCAAGACGCAGAGGTGCAAGCA 294334
Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498
|| | || || || || || | || | | | ||| | || || ||| | || |
Sbjct 294333 GACATGAAGCACTTCCCCTTCAAGGTCAT-CGAGAAGGC--TGGCAAGCCAGTCATCTCG 294277
Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
|| || | || || || | || || || ||| || || || || | ||| | |
Sbjct 294276 GTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCCGCCATGATCCTC 294217
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| ||| || | || || | || | |||| || || | | || || |
Sbjct 294216 ACAAAGATGCGTGAGACCGCAGAGTCGTACCTTGGTGGCACCGTCAACAACGCCGTCGTC 294157
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
|| || ||||| ||||| || || | ||||| |||||||| || || || ||||
Sbjct 294156 ACGGTTCCAGCATATTTCAACGACTCGCAGCGACAAGCAACAAAGGACGCCGGTCTCATT 294097
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || || || | || || ||||| || ||||| ||||| ||||| || ||
Sbjct 294096 GCTGGCCTCAACGTCCTCCGTATCATCAATGAGCCAACTGCAGCAGCCATTGCCTACGGT 294037
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
|| || || | || ||| || ||| | || || || ||| | |||||||||||
Sbjct 294036 CTCGACAAGAAGACTGAGGGCGAGCGCAATGTGCTCATCTTCGATCTTGGTGGTGGTACC 293977
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || ||| | || ||||| ||||| || || || | |||||||||
Sbjct 293976 TTCGATGTGTCGCTGCTCACAATCGAGGAGGGTATTTTCGAGGTCAAGTCCACTGCTGGT 293917
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || || || || || || || || |||
Sbjct 293916 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTTGTCAACCACTTCGTAAACGAA 293857
Query 349919 TTTAAG 349924
||||||
Sbjct 293856 TTTAAG 293851
>seq222
Length=508843
Score = 122 bits (134), Expect = 3e-22
Identities = 214/312 (69%), Gaps = 6/312 (2%)
Strand=Plus/Minus
Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635
||||||||||||| | ||| |||| |||||| | || ||||| || |||||||| || ||
Sbjct 290020 TGCTGAAGCATATCTGGGTCAAACGGTAACTCAAGCAGTTATCACGGTACCAGCTTACTT 289961
Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695
||||| ||||||| ||||| |||||||| || | || || || | | |||||
Sbjct 289960 CAATGACAGCCAGCGTCAAGCAACCAAAGATGCAGGTAAAATCGCAGGTCTGGAAGTTCT 289901
Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755
| || | || || || || || ||||| | ||||| || | || |||
Sbjct 289900 GCGTATCGTCAACGAGCCAACAGCAGCAGCTTTGGCATACGGTATGGAGAAA------TC 289847
Query 349756 CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACT 349815
| |||| ||| ||||| | | ||| || ||||| ||||| || || ||||| | ||
Sbjct 289846 CGAAGACCAAACGATTCTCGTATATGACTTGGGTGGCGGTACATTCGACGTATCCATCCT 289787
Query 349816 AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875
||| | || || | || ||||||||||| || ||||||| || || |||||
Sbjct 289786 TGAACTGGGTGACGGCTTCTTCGAAGTTAAAGCGACCAGCGGTGATAACCAACTGGGTGG 289727
Query 349876 AGAAGATTTTGA 349887
|| || |||||
Sbjct 289726 CGATGACTTTGA 289715
>seq2971
Length=246349
Score = 109 bits (120), Expect = 2e-18
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| ||||| ||| || || || || || ||
Sbjct 199918 CATACCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 199859
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || || || || || | |||||||| |||||
Sbjct 199858 GGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGG 199799
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
||||| ||||| |||||||| || || ||| || |||||||| || | || || | |
Sbjct 199798 TGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTCACATTATCGATGGTGTCGGACGACT 199740
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
|||| || || |||| ||||| ||||| | |||
Sbjct 199739 CAACCTCGAGGGTAATGGTCTTGCCGGTGACTGT 199706
Score = 104 bits (114), Expect = 7e-17
Identities = 166/236 (70%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || | || ||||| || ||||| || || || |
Sbjct 200150 TTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGT 200091
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || || ||||| || || || ||||| |
Sbjct 200090 AGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGT 200031
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| || || || || || ||||| || || | || ||||| || || | || | ||
Sbjct 200030 CAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTC-GCTG 199972
Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || || | ||||| ||||| || || || || || ||||||||
Sbjct 199971 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 199916
>seq2765
Length=312026
Score = 107 bits (118), Expect = 6e-18
Identities = 245/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| ||||| | ||||| ||| | | | || ||||||||| | || || |||| |
Sbjct 265034 CCAGAAGAGGTCTCATCCATGATCCTGGGCAAGATGAAGGAAGTCGCCGAGTCATACCTC 265093
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| |||| || || | || || | || || |||||||| || || || |||||||||
Sbjct 265094 GGCGAAAAGGTCACCAACGCAGTCGTCACAGTCCCAGCCTACTTCAACGACGCCCAGCGT 265153
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
| || || || || ||||||| || || || | || || || | | | || |||
Sbjct 265154 GCCGCTACCAAGGACGCTGGCACGATCGCCGGTCTCAACGTCCTCCGTGTCGTCAACGAA 265213
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| || || || || | || || || || || || || ||| | ||| | ||
Sbjct 265214 CCTACCGCCGCCGCTCTCGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 265270
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| | | || | |||||||||||||| ||||| || | | || | || ||||
Sbjct 265271 ATTGTCTACGACCTTGGTGGTGGTACTTTCGATGTCTCCATCTTGACTGTCGACCAGGGT 265330
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
| || || ||| | ||||| || ||||| || ||||||||||| || ||||| || |
Sbjct 265331 GTGTTCGAGGTTCAGGCAACGGCCGGTGACACCCATCTTGGTGGTGAGGATTTCGACCAG 265390
Query 349892 CGTCTCGT 349899
||| ||||
Sbjct 265391 CGTGTCGT 265398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515185731985211
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |