Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_028805.1 Length=126341 Score E Sequences producing significant alignments: (Bits) Value seq2872 141 8e-29 >seq2872 Length=271093 Score = 141 bits (156), Expect = 8e-29 Identities = 278/407 (68%), Gaps = 7/407 (2%) Strand=Plus/Minus Query 110399 ATCAATGATTTGATCGACGTTCTTGTATGCTTGCGGGCATTCATCCAGAATAGAATCAAG 110458 ||| || |||| |||||| || || || |||||||| ||||||| | ||| || ||||| Sbjct 136734 ATCCATAATTTCATCGACATTTTTATACGCTTGCGGCGATTCATCTATAATGGATTCAAG 136675 Query 110459 CACCCGATGATTCACAAGGATTTCATCGTCCTGCCCTACGCGCAACGTCTGTGCAAACTC 110518 || || ||||| | || ||||| || ||| |||| || || | ||||| || Sbjct 136674 TGAACGCTGGTTCACCACAATCTCATCTTCAGTCCCCACGCCCAGCGCCGAGGCAAAATC 136615 Query 110519 ATCAACTGTCACCAGTTCTTTGGTCGCACGGCGGGAGCGCAATCGCCCTGCCCCGTGACA 110578 || || || ||||| || || || || || || | || |||||||| ||||| Sbjct 136614 CTCCACGGTAACCAGGCGCTTTGTTGCTGTACGCGAACGAATGCGTCCTGCCCCATGACA 136555 Query 110579 TATGGAGTAAAAATTCTTAGCCCCTTCCTCTTTACCTACCATGATGAACGAACTTGTGCC 110638 || || ||| |||| | ||| || || ||||||||||| | ||| || || Sbjct 136554 GATTGAATAATAATTATCCTTCCCCTCGGGTTGGCCTACCATGATATATGAAGCAGTCCC 136495 Query 110639 CATAGAGCCGGGAATTAACGCAGGGTGTCCAGTCCCCTTGTATACTTTTGGGT--TCAGG 110696 ||| || || ||||| | || || || || || || ||| || || | || || Sbjct 136494 CATTGAACCAGGAATAAGTGCGGGATGACCTGTTGCCAGATATGGCTTCGGATTATCCGG 136435 Query 110697 AAATGACCCGGAGGAAGAGCACGTGTAGCTCCTTTACGATGTACAAGCATGG--GCTGGT 110754 |||||| | ||| | ||||||||||||||||| || ||||||| | | || | Sbjct 136434 --ATGACCTGCAGGCAATGCACGTGTAGCTCCTTTGCGGTGTACAAAAACCGACCCTTGA 136377 Query 110755 TGCG-GTGGAACTCTTTCAATGCATAGTTGTGCATCAGGTCATAAAG 110800 | || ||| | || | | ||||||||||||||||||| ||||| || Sbjct 136376 TCCGCGTGCGATTCCTCCCATGCATAGTTGTGCATCAGATCATAGAG 136330 Score = 118 bits (130), Expect = 9e-22 Identities = 189/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 111395 CTTCTCGATAGCTTTGATCAGCTTACGCTTCAAGTCTTTATCTTTCAGATCATCCTTGTG 111454 |||||| |||||||| | || ||||| || | ||| ||||| || ||||| || Sbjct 135729 CTTCTCAATAGCTTTCACGAGTTTACGGCGCAGTTTCACATCCTTCAGGTCGTCCTTATG 135670 Query 111455 AAGTGTAGTCTTCAGGACACGCATGCCACAACCAATGTCAGAACCCACGATAGAGGGTGA 111514 | | ||| | | || ||||||||||| || |||||| || ||||| || || || Sbjct 135669 CAAATTGGTCATATGCACCCGCATGCCACAGCCGATGTCACTGCCTACGATGGATGGAGA 135610 Query 111515 AACGAATCC-GTCTT-TCATGTTCCAGACGGCGGTTGTGCCTATGCACGTCCCCACCCCA 111572 || ||||| |||| || | ||| || || |||||||| ||||| || || || || Sbjct 135609 TACAAATCCACTCTTGGCA--TCCCATACCGCAGTTGTGCCGATGCAGGTACCTACACCG 135552 Query 111573 ACGTGAGCATCTGGCGTATAAGACATGTGTATGTTACGCGGTATTGCAAGGTTGTTATTC 111632 || || |||| ||||| ||| ||| | ||| ||| ||| ||| ||||| ||| Sbjct 135551 ACATGCACATCAGGCGTGTAACTCATATAGGAAATACCCGGGATTTGAAGATTGTTGTTC 135492 Query 111633 GCCATGTCGAAGACCTTATGCTCCAATG 111660 ||||| ||||| ||||||| ||||||| Sbjct 135491 GCCATCTCGAACACCTTATAATCCAATG 135464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404148977523214