Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_029104.1 Length=54312 Score E Sequences producing significant alignments: (Bits) Value seq1109 107 7e-19 seq3027 86.0 2e-12 >seq1109 Length=1760699 Score = 107 bits (118), Expect = 7e-19 Identities = 379/589 (64%), Gaps = 5/589 (1%) Strand=Plus/Minus Query 10445 AGCAGTATCAAGCGATGGGAGCTATCCAAAATTTTGATGCTCAAAAGGACATTATTGTTT 10504 ||||| ||| | || || || || |||||||||||| | ||| || || | |||| Sbjct 1349223 AGCAGCTTCAGGATATCGGGGCGATTCAAAATTTTGATTCCAAAACAGATATCACTGTTG 1349164 Query 10505 CTCCAGGTAATGATAGTGATTCATTGCTAACTGAGGGGTATATCCAACCTGTCGATGCCA 10564 |||| || ||||| | || | || | ||| | |||||||||| ||| || Sbjct 1349163 CTCCGGGCAATGAAACCGACAGTATTCTGATCGAGATTCAGGTCCAACCTGTGGATTCCG 1349104 Query 10565 TGGAGAAAAACTACTTAAAGGCGGTGGTGCGATAA-ATGGCTTTTTTAAAATATGAAGAC 10623 | || ||| || | || | | |||| ||| ||| | ||||| ||| ||| Sbjct 1349103 TTGAAAAAGTATATATGAAAGTGAAGGTGGTTTAAGATGACATTTTTGAAAGCAAGCGAC 1349044 Query 10624 ACGATAAATGGTCAGGAAGGACGTGCCTACGCCACGATTAACGGTCGTGTAGAGGAAATG 10683 ||||| || |||||||| || || ||||| |||||||| || | || |||||| Sbjct 1349043 ACGATCTCCGGCCAGGAAGGCCGCGCATACGCAACGATTAATGGACAGACGGAAGAAATG 1348984 Query 10684 TTCTGGCTTAAAAAGTTCGAGGCAAAGGTAGAAAAGAACAAAAA--AGAAGGAAAGACAC 10741 |||| | || | | | || |||| ||| || | |||||||| ||| | || || Sbjct 1348983 TTCTATGTGAAGACGCTGGAAGCAACGGTGGAGA--AACAAAAAGCAGAGGTCAAAACGT 1348926 Query 10742 TAAACAGACGCGGTACCCAGCATAAGGCAATGGGATGGAAAGGTACAGGCAGCATGACCA 10801 | | |||||| ||||| || |||| || ||| ||| | || |||||| | Sbjct 1348925 TGGGTCGCCGCGGTGTACAGCACAAAGCAACCGGTTGGTCCGGTTCGGGTTCCATGACAA 1348866 Query 10802 TCTACTATGTGACCACCCTTTTCCGCCAACTTATGCTCGATTACATGAAGACAGGTAAAG 10861 ||| |||| || ||| |||||| | || ||||| | |||||| ||| ||| | Sbjct 1348865 TCTTCTATACCACTTCCCGTTTCCGTGAGCTGATGCTACAGTACATGCAGAATGGTGTGG 1348806 Query 10862 ACATTTACTTTGATGTTCAGATCACAAATGAAGATCCGACATCTAGTGTTGGAAAGCAAA 10921 ||| ||||| || || | | || || |||||||| | |||| |||| || || | Sbjct 1348805 ACACGTACTTCGACATTGAAGTGACCAACGAAGATCCTTCCTCTACGATTGGCAAACAGA 1348746 Query 10922 CTGTTGTCATCAAAGGAATTAACCTTGATGGTATTACAATGGCTCTTTTGGACATAGATA 10981 | || | ||||||| | || || || || | | ||||| |||| | || Sbjct 1348745 CAGTAACCCTCAAAGGTGTCAATCTGGACAGTGTAATCATGGCATCCCTGGATACCGAGG 1348686 Query 10982 GTGAGGACATGGAAGAGGAGATTAGCTTCACTTGGCAAGATGCTGATAT 11030 ||||| |||| || || | ||||| || | |||||| ||||| Sbjct 1348685 CTGAGGCGTTGGAGGAAGAAGTGAGCTTTACCTTTGAAGATGTCGATAT 1348637 >seq3027 Length=236980 Score = 86.0 bits (94), Expect = 2e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 38374 CCGTTTTTCTTTTCGAACTCATCAATATGGTGTTCGATAAGATGCTCAATTTGCATAGCG 38433 || || | |||||| || || |||||||| | || || | || ||||||||||| ||| Sbjct 124567 CCTTTCTCCTTTTCAAAGTCTTCAATATGCTTCTCAATCAAATATTCAATTTGCATCGCG 124508 Query 38434 ATTGATCGTTTGTTTTTATCAGCAATATATTTAATCTTTTCGAAGTTAGTTTCTTGTAAA 38493 | || ||||||||||| ||||| || |||||| || || || || |||||| || Sbjct 124507 AGGGACCGTTTGTTTTTGTCAGCGATCACTTTAATTTTCTCAAAATTCGTTTCTCTTAGC 124448 Query 38494 CGCAATGTAAAAGGACGTTTATCAGTAGCCAT 38525 | |||||| | |||||| |||||||| Sbjct 124447 CTAGGTGTAAAGACTCTTTTATCTGTAGCCAT 124416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173669505248756