Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07-
28] 3,537 sequences; 43,616,279 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3470 163 4e-35
seq564 123 3e-23
>seq3470
Length=143118
Score = 163 bits (180), Expect = 4e-35
Identities = 348/516 (67%), Gaps = 8/516 (2%)
Strand=Plus/Plus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || |||||||| |||| ||| || |||||||| || ||||| || || || ||
Sbjct 117136 TCGTTCGAGAATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCA 117195
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
||||||||||| ||||| ||||| || ||||| ||||||||| | || | || |
Sbjct 117196 AAAGATCCAGAGAAGAAGATGCCCTCAACGGCGGCAAATGCGATGAGACGGAGGGCGAAT 117255
Query 48303 CTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
| | | |||| ||||| || ||||| ||||||||| | | || ||
Sbjct 117256 GTCGAGTTCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGG 117315
Query 48360 ATTGTTTCTATAGCATTAAAGA-GAAAGtttttttCATTGCTATCTTTAACGTAAGTATC 48418
|| | || || ||||| || | | | ||| | | ||| || | | ||| |||||
Sbjct 117316 ATGTTGTCGATGGCATTGAACAGGTATGTTCGCTGCTTTG-GCTCGCTGATGTATGTATC 117374
Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478
|| | ||| ||| | |||||||| || || || || ||||| || ||||| ||
Sbjct 117375 GATGAGAAGGGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAA 117434
Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538
|||| || || | |||||| ||||| | | || || || | | ||||| || ||
Sbjct 117435 GCATCGTGCCTCCGGGATCTGCACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGAC 117494
Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598
|| ||||| || || || ||||| | || ||| || || || ||||| |
Sbjct 117495 AATGCCATCGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTC 117554
Query 48599 AGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655
| ||| || |||||||| | || ||| || || | ||| | || |||||||||||
Sbjct 117555 GTTGAGTCGCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCA 117614
Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
||||| ||||| || ||||| ||||| | ||||||
Sbjct 117615 GAATGAGGCCTCGGCCTTTTTGTACATTTGCCATAT 117650
>seq564
Length=57547
Score = 123 bits (136), Expect = 3e-23
Identities = 588/924 (64%), Gaps = 18/924 (2%)
Strand=Plus/Minus
Query 77730 ATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTT 77789
|| ||||| || || | |||| | ||||| ||||| ||||| | |||||||||||
Sbjct 6963 ATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTG 6904
Query 77790 TTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATA 77849
||| | |||||| || ||||| || || || ||||| || |||| | |||| |
Sbjct 6903 CGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGA 6844
Query 77850 ATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTA-TCGCCTCTCTCTTTCAT 77907
|||| | ||| | ||| ||| | | | | | |||| ||||| ||||
Sbjct 6843 ATAGCATACCATATTT-TCTGAGCACGAACCGTCTCACGGCCCTTGCCT-TCTCTCTCAT 6786
Query 77908 ATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCAT 77967
| | || ||| | || || || || | ||||| || ||||||||||| |
Sbjct 6785 AACGCTCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGT 6726
Query 77968 TTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTA 78027
| |||||||| | | ||| || | | | || || | |||||||||||| || |
Sbjct 6725 TGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAA 6666
Query 78028 TCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAA 78087
|||| ||||| || | ||| || | | | |||||| ||||| ||||| ||
Sbjct 6665 TCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAA 6606
Query 78088 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAG 78147
| || | |||| ||| | || | ||||| || || || || || || | | | || |
Sbjct 6605 GGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTG 6546
Query 78148 GTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTG 78207
| || || || || ||||| || | || | || ||||| || || |||| | |||||
Sbjct 6545 GACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTG 6486
Query 78208 GAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATAT 78267
| | || |||||| ||||| || ||||| || ||| || || | || | || |
Sbjct 6485 GTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGT 6426
Query 78268 TACTA--ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAA 78325
| | ||| | | || || || || || |||| || || | || || || |
Sbjct 6425 TGTGAACATGAAGA--CCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAG 6368
Query 78326 TGTATCGTAGATACCCTCTATACTGTCATCCATCATG----TTAAGAAGAAAACAGCTAG 78381
|| ||||||||||| || || ||||||||| ||||| |||||| | |||||
Sbjct 6367 GGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG 6308
Query 78382 ACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATT 78441
|| || || || ||| | || | ||| || || ||||| || || | |
Sbjct 6307 ----CTGCGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACT 6252
Query 78442 TTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500
| || | |||| |||||||| || || |||| ||| ||||| ||||| ||
Sbjct 6251 TCAACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCG 6193
Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAAC 78560
|| || |||||||| | ||| || || ||||| || | ||| || ||| | |
Sbjct 6192 ACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGA 6133
Query 78561 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAA 78620
| ||||||| |||| ||| || || || || || | ||| ||||| | || ||
Sbjct 6132 AGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAG 6073
Query 78621 ATAATAACAGAATTTAGTTTATCT 78644
| ||| | || || || | ||||
Sbjct 6072 ACAATGGCCGAGTTCAGCTCATCT 6049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694638086955680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |