Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3470 163 4e-35 seq564 123 3e-23 >seq3470 Length=143118 Score = 163 bits (180), Expect = 4e-35 Identities = 348/516 (67%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || |||||||| |||| ||| || |||||||| || ||||| || || || || Sbjct 117136 TCGTTCGAGAATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCA 117195 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||||||||||| ||||| ||||| || ||||| ||||||||| | || | || | Sbjct 117196 AAAGATCCAGAGAAGAAGATGCCCTCAACGGCGGCAAATGCGATGAGACGGAGGGCGAAT 117255 Query 48303 CTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | | |||| ||||| || ||||| ||||||||| | | || || Sbjct 117256 GTCGAGTTCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGG 117315 Query 48360 ATTGTTTCTATAGCATTAAAGA-GAAAGtttttttCATTGCTATCTTTAACGTAAGTATC 48418 || | || || ||||| || | | | ||| | | ||| || | | ||| ||||| Sbjct 117316 ATGTTGTCGATGGCATTGAACAGGTATGTTCGCTGCTTTG-GCTCGCTGATGTATGTATC 117374 Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 || | ||| ||| | |||||||| || || || || ||||| || ||||| || Sbjct 117375 GATGAGAAGGGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAA 117434 Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538 |||| || || | |||||| ||||| | | || || || | | ||||| || || Sbjct 117435 GCATCGTGCCTCCGGGATCTGCACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGAC 117494 Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598 || ||||| || || || ||||| | || ||| || || || ||||| | Sbjct 117495 AATGCCATCGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTC 117554 Query 48599 AGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 | ||| || |||||||| | || ||| || || | ||| | || ||||||||||| Sbjct 117555 GTTGAGTCGCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCA 117614 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||||| ||||| || ||||| ||||| | |||||| Sbjct 117615 GAATGAGGCCTCGGCCTTTTTGTACATTTGCCATAT 117650 >seq564 Length=57547 Score = 123 bits (136), Expect = 3e-23 Identities = 588/924 (64%), Gaps = 18/924 (2%) Strand=Plus/Minus Query 77730 ATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTT 77789 || ||||| || || | |||| | ||||| ||||| ||||| | ||||||||||| Sbjct 6963 ATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTG 6904 Query 77790 TTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATA 77849 ||| | |||||| || ||||| || || || ||||| || |||| | |||| | Sbjct 6903 CGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGA 6844 Query 77850 ATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTA-TCGCCTCTCTCTTTCAT 77907 |||| | ||| | ||| ||| | | | | | |||| ||||| |||| Sbjct 6843 ATAGCATACCATATTT-TCTGAGCACGAACCGTCTCACGGCCCTTGCCT-TCTCTCTCAT 6786 Query 77908 ATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCAT 77967 | | || ||| | || || || || | ||||| || ||||||||||| | Sbjct 6785 AACGCTCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGT 6726 Query 77968 TTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTA 78027 | |||||||| | | ||| || | | | || || | |||||||||||| || | Sbjct 6725 TGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAA 6666 Query 78028 TCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAA 78087 |||| ||||| || | ||| || | | | |||||| ||||| ||||| || Sbjct 6665 TCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAA 6606 Query 78088 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAG 78147 | || | |||| ||| | || | ||||| || || || || || || | | | || | Sbjct 6605 GGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTG 6546 Query 78148 GTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTG 78207 | || || || || ||||| || | || | || ||||| || || |||| | ||||| Sbjct 6545 GACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTG 6486 Query 78208 GAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATAT 78267 | | || |||||| ||||| || ||||| || ||| || || | || | || | Sbjct 6485 GTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGATGT 6426 Query 78268 TACTA--ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAA 78325 | | ||| | | || || || || || |||| || || | || || || | Sbjct 6425 TGTGAACATGAAGA--CCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAG 6368 Query 78326 TGTATCGTAGATACCCTCTATACTGTCATCCATCATG----TTAAGAAGAAAACAGCTAG 78381 || ||||||||||| || || ||||||||| ||||| |||||| | ||||| Sbjct 6367 GGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG 6308 Query 78382 ACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATT 78441 || || || || ||| | || | ||| || || ||||| || || | | Sbjct 6307 ----CTGCGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACT 6252 Query 78442 TTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500 | || | |||| |||||||| || || |||| ||| ||||| ||||| || Sbjct 6251 TCAACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCG 6193 Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAAC 78560 || || |||||||| | ||| || || ||||| || | ||| || ||| | | Sbjct 6192 ACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGA 6133 Query 78561 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAA 78620 | ||||||| |||| ||| || || || || || | ||| ||||| | || || Sbjct 6132 AGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAG 6073 Query 78621 ATAATAACAGAATTTAGTTTATCT 78644 | ||| | || || || | |||| Sbjct 6072 ACAATGGCCGAGTTCAGCTCATCT 6049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694638086955680