Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3470 143 4e-29 seq564 125 1e-23 >seq3470 Length=143118 Score = 143 bits (158), Expect = 4e-29 Identities = 548/851 (64%), Gaps = 12/851 (1%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || || ||||| |||||||| || || || ||||| ||| || || || Sbjct 116803 TTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATGTTC 116862 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| || || || || || || | || || | || || || | | | | | Sbjct 116863 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAACAGT 116922 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || |||||||| || || | ||| | || ||||| || | || Sbjct 116923 AGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGAAGC 116982 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||| || ||||| || || | ||||| || ||||| ||||| || || | || || Sbjct 116983 TTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCAATCGTGACGGCCTCGGTAATGAT- 117041 Query 46579 GATGTT-ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | | || ||| | || | | ||| ||| |||| | || || || Sbjct 117042 GCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGAACAGAAGGCAGGCGAA 117101 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 || || | ||| ||||| | || | ||||| || ||||||||||| | ||| Sbjct 117102 GTCTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGAATGTGAGCCCGGCCAT 117161 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| || || ||||| || ||||| || ||||||||||| ||||| ||||| || Sbjct 117162 GAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGATCCAGAGAAGAAGATGCCCTC 117221 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCT 46814 || || || ||||||| || | || | | | | || | | ||||| | Sbjct 117222 AACGGCGGCAAATGCGATGAGACGGAGGGCGAATGTCGAGTTCTTGTCAGAAATCCATCG 117281 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||||| |||||||| | | || || || | || || ||||| || || | Sbjct 117282 CAACGCCCAGTCAGCCTTCCTGCGGATGCATGGGATGTTGTCGATGGCATTGAACAGGTA 117341 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 || | | || | | |||||||| || | ||| ||| | || || || Sbjct 117342 TGTTCGCTGCTTTGGCTCGCTGATGTATGTATCGATGAGAAGGGAATATGTCTCGGAGTG 117401 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 ||||| || || ||||| || ||||| || |||| ||| || | ||||| ||||| Sbjct 117402 GATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGCACCTC 117461 Query 46995 TGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 | | || || || ||| | ||||| || || || ||||| || || || |||| Sbjct 117462 AGAGCTGAAGCGCTC-GACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAGAATG 117520 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCG--GT--AGTCAGTTTATTCCAGTCATTG 47109 | | || ||| || || || ||| ||| || |||| | || |||||||| | | Sbjct 117521 CGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTC-GCTTGTTCCAGTCGTGG 117579 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 | ||| || || | ||| | || ||||||||||||||||| ||||| || ||||| ||| Sbjct 117580 AGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTGTAC 117639 Query 47170 ATATTCCATAT 47180 || | |||||| Sbjct 117640 ATTTGCCATAT 117650 >seq564 Length=57547 Score = 125 bits (138), Expect = 1e-23 Identities = 615/977 (63%), Gaps = 30/977 (3%) Strand=Plus/Minus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 ||||| | || || ||||| || || || ||||||| | | | || | || ||| Sbjct 7017 AGAGCAAGCGAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATC 6958 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||||| | |||| | |||||| || |||||||| | ||||||||||| ||| Sbjct 6957 TCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTG 6898 Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450 | |||||| || |||| || || || || || || |||| | |||| ||||| Sbjct 6897 GCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCA 6838 Query 76451 TTCCAGACGACTCTAGCTTTTATTATA--GATTTGTATCGCTTC--------TCTCTTTC 76500 | ||| | |||| | | || || || | | ||||| || Sbjct 6837 TACCATA----------TTTTCTGAGCACGAACCGTCTCACGGCCCTTGCCTTCTCTCTC 6788 Query 76501 ATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 ||| | || | | | || || || || | ||||| || |||||| ||||| Sbjct 6787 ATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTC 6728 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 || || ||||| | | ||| || | | | || || | |||||||||||| || Sbjct 6727 GTTGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGG 6668 Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680 ||||| ||||| || | ||| || | | | |||||| ||||| ||||| Sbjct 6667 AATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCG 6608 Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACC 76740 ||| || | ||||| ||| | || | ||||| || || || || || || | | |||| Sbjct 6607 AAGGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACC 6548 Query 76741 CGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACAT 76800 || || || || || ||||| || | || | |||||||| || || |||| | ||| Sbjct 6547 TGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCAT 6488 Query 76801 TGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT 76860 ||| | || ||||| ||||| || ||||| || ||| || || || | || Sbjct 6487 TGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTAGCCCTGAT 6428 Query 76861 ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAA 76920 || || | || || || || || || | || ||||| | ||||| || | Sbjct 6427 GTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAG 6368 Query 76921 TGTGTCATAGATGCCCTCTATACTATCATCCATCATG----TTAAGAAGAAAACAGCTAG 76976 ||||| ||||| || || || || |||||| ||||| |||||| | ||||| Sbjct 6367 GGTGTCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG 6308 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 || || || || ||| | || | ||| || || ||||| ||||| | | Sbjct 6307 ----CTGCGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACT 6252 Query 77037 TTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCT 77095 | || | |||| |||||||| || || ||||||| || || ||||| || Sbjct 6251 TCAACGACATGTAG-TTGTATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCG 6193 Query 77096 ACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAAC 77155 ||||| |||||||| | ||| || || |||| || || ||| || ||| | | Sbjct 6192 ACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGA 6133 Query 77156 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 77215 | ||||||| |||| ||| || || || || || | ||| ||||| | || || Sbjct 6132 AGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAG 6073 Query 77216 ATAATAACCGAATTTAG 77232 | ||| |||| || || Sbjct 6072 ACAATGGCCGAGTTCAG 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712902879387840