Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236565.1_202017-07- 28] 3,537 sequences; 43,616,279 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq3414 95.1 1e-14 seq1140 89.7 6e-13 >seq3414 Length=148627 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/126 (79%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 4874 CTCGAACTTCGGACACCCGGATTAAAAGTCCGGTGCTCTAACCAACTGAGCTAGT-ATCC 4932 ||||||| | ||||||| ||||||||||| |||||||| ||||||||||||| | | | Sbjct 153 CTCGAACCTTCGACACCCTGATTAAAAGTCAGGTGCTCT-ACCAACTGAGCTAATGACTC 95 Query 4933 CTAAATTTGGTGGGGAGTAATGGAGTCGAACCACTCGAGCCTTTTGAGCAACAGATTTAC 4992 |||| |||||| | | ||||| ||||||||| ||| || | | | ||||||||| Sbjct 94 GTAAAACTGGTGGAGGATGATGGATTCGAACCAC-CGAACCCGTACGGGAGCAGATTTAC 36 Query 4993 AGTCTG 4998 |||||| Sbjct 35 AGTCTG 30 >seq1140 Length=804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 4874 CTCGAACTTCGGACACCCGGATTAAAAGTCCGGTGCTCTAACCAACTGAGCTAGT-ATCC 4932 ||||||| | ||||||| ||||||||||| |||||||| ||||||||||||| | | | Sbjct 613 CTCGAACCTTCGACACCCTGATTAAAAGTCAGGTGCTCT-ACCAACTGAGCTAATGACTC 555 Query 4933 CTA-AATTTGGTGGGGAGTAATGGAGTCGAACCACTCGAGCCTTTTGAGCAACAGATTTA 4991 || || |||||| | | ||||| ||||||||| ||| || | | | |||||||| Sbjct 554 ATAGAAACTGGTGGAGGATGATGGATTCGAACCAC-CGAACCCGTACGGGAGCAGATTTA 496 Query 4992 CAGTCTG 4998 ||||||| Sbjct 495 CAGTCTG 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539873729777360