Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236575.1_202017-07-
28] 132 sequences; 30,154,641 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq55 271 8e-68
seq100 132 5e-26
seq67 113 5e-20
seq57 84.2 2e-11
>seq55
Length=447353
Score = 271 bits (300), Expect = 8e-68
Identities = 581/859 (68%), Gaps = 17/859 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || ||||| || ||||| || || || || || || |
Sbjct 250765 CATGACACCAGCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 250824
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCC 132707
|| |||||| | ||| || || |||||||||| | ||||||| | |||| ||||
Sbjct 250825 CAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 250884
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767
|| | | | || || | ||||| ||||| || |||||||| |||||| |
Sbjct 250885 GA---GTGCTAACAGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGC 250941
Query 132768 ATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | ||||| || ||| || || || || || | || |||||||| | ||
Sbjct 250942 GTTCATCCCCAGAAGCTTGCAT-GGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGA 251000
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || ||||||| ||| | || | ||| | ||||| | | || |||| ||
Sbjct 251001 CGGCCTCGGTGATGATGCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGA 251060
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
||| | ||| || ||||| |||| |||||| || | ||| ||||| ||||| ||
Sbjct 251061 ACAGAAGGCAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGA 251120
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| || | |||| |||||| || ||||| || ||||| || || || || ||| || |
Sbjct 251121 ATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGATCCAG 251180
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
| ||||||| ||||| ||||| || || || | || || | |||| || | | |
Sbjct 251181 AGAAGAAGATACCCTCAACGGCGGCAAATGCAATGAGACGGAGGGCGAATGTCGAGTTCT 251240
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126
|| | ||||| |||| |||||| || ||||| || ||| || || | ||||
Sbjct 251241 TGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGGATGTTGTCGA 251300
Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGT 133184
|||| || |||| | | ||| || | || ||| | ||| || ||||||||
Sbjct 251301 TGGCATTGAACAG--GTATGTTCGCTGCTTTGGCTCGCTGATGTATGTATCGATGAGAAG 251358
Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244
||||| | || ||||| | ||||||||| ||| || |||||||| ||||| || ||
Sbjct 251359 GGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGC 251418
Query 133245 CTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303
||| | |||||| || |||| ||| |||||||| || || |||||||| ||||| |
Sbjct 251419 CTCCGGGATCTGCACCTCA-GAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCAT 251477
Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363
|| |||||||| || || || ||||| |||||| || |||| |||||| | |
Sbjct 251478 CGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTC 251537
Query 133364 GCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420
||| ||||||| | ||||| ||||| || | |||||| | ||||| || || |
Sbjct 251538 GCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGG 251597
Query 133421 CCTCGGCTTTTTTGTACAT 133439
||||||| |||||||||||
Sbjct 251598 CCTCGGCCTTTTTGTACAT 251616
>seq100
Length=1030212
Score = 132 bits (146), Expect = 5e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| ||| |
Sbjct 662644 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 662585
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || || | |||||
Sbjct 662584 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 662525
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| || ||||| ||||| || || | || || || ||||||||||
Sbjct 662524 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCCGACTACAAC 662465
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| || ||| |||| || || |||||||| |||
Sbjct 662464 ATCCAGAAAGAATCGACTCTCCACTTGGTGCTTCGT 662429
Score = 129 bits (142), Expect = 6e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| |||||||| |||| || || | ||
Sbjct 662416 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACCATCACACTCGAAGTGGAATCATCC 662357
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || ||| |||| ||||| ||||| || || | |||||
Sbjct 662356 GACACGATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCA 662298
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| ||||| || |||| || || || || |||||
Sbjct 662297 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAA 662238
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| | || ||||| |||||||||||| | | || ||||
Sbjct 662237 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTCCGTGGAGGCC 662188
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/197 (72%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||| ||| |||| || ||| | |||||| | | | || | | ||
Sbjct 662850 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATG--TGAA 662793
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| || || || || ||||| | ||||| || || | |||| ||| ||
Sbjct 662792 GAGCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTCGCAGG 662733
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGC 38442
||| ||||| || |||| |||||||| |||||||||||| || ||||| ||| || |
Sbjct 662732 CAAGCAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGAGC-ACTC 662674
Query 38443 TGCATTTGGTGCTGCGT 38459
| ||| | || || |||
Sbjct 662673 TCCATCTCGTCCTCCGT 662657
>seq67
Length=1513308
Score = 113 bits (124), Expect = 5e-20
Identities = 137/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
|||||||| || ||||| ||||| |||||||| |||| |||||| | | ||||| | |
Sbjct 1106280 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATC 1106221
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| |||||||| || | ||||| |||||
Sbjct 1106220 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTT 1106163
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || ||| |||| || | ||||||||| ||||||||||||||| |
Sbjct 1106162 TGATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGA 1106103
Query 38431 AGG 38433
|||
Sbjct 1106102 AGG 1106100
>seq57
Length=417519
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||||||||| | ||||| ||||| | || | ||| ||||| ||||| ||
Sbjct 229718 GACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 229659
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455
|| | ||||||||| |||||||||||| || ||||| ||| || || || | || ||
Sbjct 229658 GATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGAGC-ACCCTCCACCTCGTCCT 229600
Query 38456 GCGTTTGAGAGGCGG 38470
||| || | || ||
Sbjct 229599 CCGTCTGCGTGGTGG 229585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171974714880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |