Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236575.1_202017-07- 28] 132 sequences; 30,154,641 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq55 176 8e-39 seq38 156 8e-33 >seq55 Length=447353 Score = 176 bits (194), Expect = 8e-39 Identities = 560/862 (65%), Gaps = 34/862 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||| ||||| | |||| |||||| || || |||||||||||| Sbjct 251625 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 251566 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGA-GCAGCATT-TTC-TCAAG 25593 | ||||| | ||| |||| || | | ||| ||||| | | ||| ||| || Sbjct 251565 TCGAAGGATCTCCACGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTCA 251506 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || || ||||| || || |||||||| || |||| | Sbjct 251505 CACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCGC 251446 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | || |||||| | |||||| || |||||||| |||||||| || Sbjct 251445 TTCAGCTCTGAGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATG 251386 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTA--CAGACG 25768 || || | ||||| ||| ||| || ||||| || || ||||| | || | Sbjct 251385 GAGAACATCCACTCCGAGACATATTCC---CTTCTCATCGATACATACATCAGCGAGCCA 251329 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || | || | || ||||| ||||||||| |||| || ||||| ||||||| Sbjct 251328 AAGCAGCGA-ACAT-ACCTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGG 251271 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| || ||||| | ||| | | || || | | || || | | Sbjct 251270 CTGACTGGGCGTTGCGATGGATTTCTGACAAGAACTCGACATTCGCCCTCCGTCTCATTG 251211 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 | ||||| || || ||||| ||||| ||| || || ||||| || ||||||||||| | Sbjct 251210 CATTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 251151 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || | | | || | |||| ||||||| || || |||||||||||| | | || ||| Sbjct 251150 AG-AAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAG 251092 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 || | |||| ||| || |||||||| || | | || || || |||| || Sbjct 251091 GGCATGCACACAGACTTCGCCTGCCTTCTGTTCTCG---CATCTGAAGAACAAGCCGAAC 251035 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 || | || | || ||||||| ||||| || ||||||| ||||||| Sbjct 251034 CAGGCCCTTGTGCAGAGCATCATCACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGACA 250975 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 |||| |||||| | |||||| ||||||||||| Sbjct 250974 GACGCTCTTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAA 250915 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGTACG 26241 | || ||||| | || |||| | | ||||| | ||| |||||| ||| Sbjct 250914 TTCGTCGCCGATCGCCTACTGT------TAGCACTCGGCAACAAGAAGTTCTACA--ACG 250863 Query 26242 C--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | | ||||| |||||||| ||||| ||||| ||| ||| || |||||||||||||| | Sbjct 250862 CCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCG 250803 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||| | || ||||| || || Sbjct 250802 AGAAGCGTGTTGGCGAGTACCA 250781 >seq38 Length=777079 Score = 156 bits (172), Expect = 8e-33 Identities = 430/649 (66%), Gaps = 25/649 (4%) Strand=Plus/Minus Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTA 221809 |||| |||||||| || || | || || ||||||||| || || | || ||||| Sbjct 235011 TACTCCATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTG 234952 Query 221810 GACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869 |||||| ||||| ||||||||||| || || || || ||| ||||| ||| ||| Sbjct 234951 CTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCC 234892 Query 221870 ACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGT 221928 | ||||| | ||| | || |||| || | |||||| | || || | | | Sbjct 234891 TCGAGAATAGCATACCATATTT-TCTGAGCACGAACCGTC----TCACGGCCCTTGCCTT 234837 Query 221929 CTTT-TCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987 || | ||||| | || ||| | |||| |||||||| | || ||| || | Sbjct 234836 CTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAACATCCGACAGACCAG 234777 Query 221988 GACACCTGGCGGGACACATCAGACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAG 222046 | || | ||| ||||||||| |||| |||| ||| | || ||| | |||||| ||| Sbjct 234776 GGCATTCGTTGGGGCACATCAGAGTCCAAGTGCC-GTTCTGTTCGACACGCTGCATAAAG 234718 Query 222047 AGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTG 222106 || || || ||||| || || | || | ||| | | || || ||| || | | Sbjct 234717 AGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGG 234658 Query 222107 TTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCC 222166 || || | || |||| |||| | | ||| || ||||||||||| || |||| ||| Sbjct 234657 TTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCA 234598 Query 222167 AGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTG---AA 222222 | ||| || || ||||||||||||||||| | || | | | || || |||| | Sbjct 234597 AAAGCACCTGGACGCTTGTTGCCACCCTGGT----CAACGTAACGAGCAGTGTTGTTATA 234542 Query 222223 GATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACC 222282 || || || | ||||| || ||||||||| ||||| ||||| |||||| | || Sbjct 234541 GACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCC 234482 Query 222283 GCCGGCCCTCAGGTT----ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCA 222338 |||||| | ||| || | ||| || ||||| || |||| || ||||||| Sbjct 234481 TGTGGCCCTGATGTTGTGAACATGAAGA----CCAATACCGCCAGCGTTCTTGGAGATCA 234426 Query 222339 TGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT 222387 |||| || ||||||| || || ||| || || || ||| ||||| Sbjct 234425 TGGCACATATCTTGAGGGTATCGTAGATACCATCAATGCTGTCATCCTT 234377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843267406080