Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236575.1_202017-07- 28] 132 sequences; 30,154,641 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq78 134 2e-25 seq55 134 2e-25 seq38 98.7 1e-14 seq44 93.3 5e-13 seq111 91.5 2e-12 >seq78 Length=1471894 Score = 134 bits (148), Expect = 2e-25 Identities = 141/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | |||||| || | ||| ||| | ||||| ||| | | || ||| Sbjct 1323967 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 1324025 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | | Sbjct 1324026 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 1324085 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | |||||||||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 1324086 TCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAACATTCAGA 1324145 Query 1592298 ACG 1592300 ||| Sbjct 1324146 ACG 1324148 >seq55 Length=447353 Score = 134 bits (148), Expect = 2e-25 Identities = 307/462 (66%), Gaps = 0/462 (0%) Strand=Plus/Minus Query 1573777 TCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACG 1573836 |||| || | |||||||| ||||| | | ||||||||||| ||||||||| | Sbjct 47048 TCCCTAGGGTTGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAA 46989 Query 1573837 CCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGG 1573896 || ||| |||| | | || |||||| ||||||| || | | | ||| Sbjct 46988 CCATCGAACGCCTCAAAATCATCGCCAAAGACGGCAACATGCCACACGTAATCATCTCGG 46929 Query 1573897 GTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCG 1573956 | |||||| | ||||| ||||| || || || ||||| ||||| |||| Sbjct 46928 GCATGCCCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCG 46869 Query 1573957 CGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCG 1574016 | ||| | | || ||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 46868 CAGCCTACAAAGAAGCCGTCCTCGAACTCAACGCCTCGGACGAGCGCGGAATCGACGTCG 46809 Query 1574017 TGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACA 1574076 | || || |||||| | ||| || | | || || || ||| || || | Sbjct 46808 TACGAAACCGAATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGACGGGCGGCAGA 46749 Query 1574077 AGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGT 1574136 || | | || || || || || || || | || || | || |||||||| ||||| Sbjct 46748 AGATTGTAATTCTAGATGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGCC 46689 Query 1574137 CCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGA 1574196 || ||||||| ||| || |||||| ||||| ||| | || || ||| ||| | Sbjct 46688 GAACGATGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGTAACCAATCGAACA 46629 Query 1574197 TGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 |||||||| | |||||| |||||||| || | |||| Sbjct 46628 AAATCATCGAGCCTCTCCAATCGCGCTGCGCAATCTTACGCT 46587 Score = 116 bits (128), Expect = 5e-20 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | ||||| || Sbjct 250775 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 250834 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | | ||||| | Sbjct 250835 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCTAAC 250894 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| |||||||| || || ||||| || |||||||||| |||||||| || | Sbjct 250895 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 250954 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| || || | || ||| ||||| | ||||||| |||||||||| |||| Sbjct 250955 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATG 251014 Query 868931 AT 868932 || Sbjct 251015 AT 251016 Score = 107 bits (118), Expect = 2e-17 Identities = 176/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | | || Sbjct 251372 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGC 251431 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| || ||||| ||| |||||||| Sbjct 251432 ACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAG 251491 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||| ||| || ||||||||| ||| || ||||| | Sbjct 251492 AATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCG 251551 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || || || | |||||| || ||||||| |||||||||||||||||| Sbjct 251552 TGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTG 251611 Query 869870 TACATCTCCCATA 869882 ||||| | ||||| Sbjct 251612 TACATTTGCCATA 251624 >seq38 Length=777079 Score = 98.7 bits (108), Expect = 1e-14 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 ||||||| || || ||||| | | ||| || || | ||| |||||| | ||| ||| Sbjct 235625 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 235566 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| | ||||| ||||||||| |||| ||| || ||||| |||| Sbjct 235565 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 235507 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511 ||||| ||||||||||||| ||||||| | ||| || || | | || ||| ||||||| Sbjct 235506 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 235448 Query 1627512 CCAGCGGCCG 1627521 |||| || || Sbjct 235447 CCAGAGGTCG 235438 >seq44 Length=608474 Score = 93.3 bits (102), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| ||||| || ||||| |||||| |||||| || ||||||| || ||| Sbjct 596397 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 596338 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | || ||| | ||||| ||||||||||| || || || || Sbjct 596337 CCTTGCTTTGACAAATTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACG 596278 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201 || || || || ||||| ||| || |||| ||| Sbjct 596277 AAAGGCTTTGAATTTGGCTCCGGCTTCGGCGGATGC 596242 >seq111 Length=895597 Score = 91.5 bits (100), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| |||| Sbjct 725958 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 725899 Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049 |||||||||||||| | |||||| Sbjct 725898 GATAGGCGCGCATGATGATGCAAAG 725874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107128367461844