Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236575.1_202017-07-
28] 132 sequences; 30,154,641 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq78 134 2e-25
seq55 134 2e-25
seq38 98.7 1e-14
seq44 93.3 5e-13
seq111 91.5 2e-12
>seq78
Length=1471894
Score = 134 bits (148), Expect = 2e-25
Identities = 141/183 (77%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | |||||| || | ||| ||| | ||||| ||| | | || |||
Sbjct 1323967 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 1324025
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | |
Sbjct 1324026 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 1324085
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
| |||||||||||||||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 1324086 TCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAACATTCAGA 1324145
Query 1592298 ACG 1592300
|||
Sbjct 1324146 ACG 1324148
>seq55
Length=447353
Score = 134 bits (148), Expect = 2e-25
Identities = 307/462 (66%), Gaps = 0/462 (0%)
Strand=Plus/Minus
Query 1573777 TCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACG 1573836
|||| || | |||||||| ||||| | | ||||||||||| ||||||||| |
Sbjct 47048 TCCCTAGGGTTGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAA 46989
Query 1573837 CCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGG 1573896
|| ||| |||| | | || |||||| ||||||| || | | | |||
Sbjct 46988 CCATCGAACGCCTCAAAATCATCGCCAAAGACGGCAACATGCCACACGTAATCATCTCGG 46929
Query 1573897 GTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCG 1573956
| |||||| | ||||| ||||| || || || ||||| ||||| ||||
Sbjct 46928 GCATGCCCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCG 46869
Query 1573957 CGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCG 1574016
| ||| | | || ||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 46868 CAGCCTACAAAGAAGCCGTCCTCGAACTCAACGCCTCGGACGAGCGCGGAATCGACGTCG 46809
Query 1574017 TGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACA 1574076
| || || |||||| | ||| || | | || || || ||| || || |
Sbjct 46808 TACGAAACCGAATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGACGGGCGGCAGA 46749
Query 1574077 AGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGT 1574136
|| | | || || || || || || || | || || | || |||||||| |||||
Sbjct 46748 AGATTGTAATTCTAGATGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGCC 46689
Query 1574137 CCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGA 1574196
|| ||||||| ||| || |||||| ||||| ||| | || || ||| ||| |
Sbjct 46688 GAACGATGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGTAACCAATCGAACA 46629
Query 1574197 TGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
|||||||| | |||||| |||||||| || | ||||
Sbjct 46628 AAATCATCGAGCCTCTCCAATCGCGCTGCGCAATCTTACGCT 46587
Score = 116 bits (128), Expect = 5e-20
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||||| || ||| |||||| |||||||||||||| | ||||| ||
Sbjct 250775 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 250834
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | | ||||| |
Sbjct 250835 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCTAAC 250894
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| ||||| |||||||| || || ||||| || |||||||||| |||||||| || |
Sbjct 250895 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 250954
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||| || || | || ||| ||||| | ||||||| |||||||||| ||||
Sbjct 250955 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATG 251014
Query 868931 AT 868932
||
Sbjct 251015 AT 251016
Score = 107 bits (118), Expect = 2e-17
Identities = 176/253 (70%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| | |||| | | ||
Sbjct 251372 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGC 251431
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || | ||||||||| || ||||| ||| ||||||||
Sbjct 251432 ACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAG 251491
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
|| || |||||||| ||| ||| || ||||||||| ||| || ||||| |
Sbjct 251492 AATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCG 251551
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || || || | |||||| || ||||||| ||||||||||||||||||
Sbjct 251552 TGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTG 251611
Query 869870 TACATCTCCCATA 869882
||||| | |||||
Sbjct 251612 TACATTTGCCATA 251624
>seq38
Length=777079
Score = 98.7 bits (108), Expect = 1e-14
Identities = 139/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
||||||| || || ||||| | | ||| || || | ||| |||||| | ||| |||
Sbjct 235625 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 235566
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| | ||||| ||||||||| |||| ||| || ||||| ||||
Sbjct 235565 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 235507
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511
||||| ||||||||||||| ||||||| | ||| || || | | || ||| |||||||
Sbjct 235506 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 235448
Query 1627512 CCAGCGGCCG 1627521
|||| || ||
Sbjct 235447 CCAGAGGTCG 235438
>seq44
Length=608474
Score = 93.3 bits (102), Expect = 5e-13
Identities = 115/156 (74%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| ||||| || ||||| |||||| |||||| || ||||||| || |||
Sbjct 596397 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 596338
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||||||||| | || ||| | ||||| ||||||||||| || || || ||
Sbjct 596337 CCTTGCTTTGACAAATTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACG 596278
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201
|| || || || ||||| ||| || |||| |||
Sbjct 596277 AAAGGCTTTGAATTTGGCTCCGGCTTCGGCGGATGC 596242
>seq111
Length=895597
Score = 91.5 bits (100), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024
|||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| ||||
Sbjct 725958 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 725899
Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049
|||||||||||||| | ||||||
Sbjct 725898 GATAGGCGCGCATGATGATGCAAAG 725874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107128367461844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |