Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236585.1_202017-07- 28] 218 sequences; 30,882,610 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq185 307 1e-78 seq207 152 5e-32 seq142 123 3e-23 >seq185 Length=938846 Score = 307 bits (340), Expect = 1e-78 Identities = 556/796 (70%), Gaps = 23/796 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||| | |||||| | || ||| Sbjct 320689 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 320630 Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || ||||| | | | ||||||| | ||| | |||||| |||| || |||||| Sbjct 320629 TCGAAGGATCTCCA-CGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTC 320571 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || |||||||| ||| ||||| ||||||||||| || |||||||| Sbjct 320570 ACACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCG 320511 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| |||| | |||||||| | | ||||| || |||||||||||||| |||||| | Sbjct 320510 CTTCAGCTCTG-AGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGA 320452 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTC 116928 |||||||| | ||||| || | ||||| |||||||| || ||| | ||| | Sbjct 320451 TGGAGAACATCCACTCCGAGACATATTCCCTTCTCATCGATACATACATCAGCGAGCCAA 320392 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | ||| | | |||| || |||||||| | || || ||| || |||||| Sbjct 320391 AGCAGCGAACATAC--CTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGGC 320334 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047 || |||||| |||| ||||| | | || ||| || | |||| | || || | | Sbjct 320333 TGACTGGGCGTTGCGATGGATTTCTGACA-AGAACTCGACATTCGCCCTCCGTCTCATTG 320275 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | || || ||||| ||||| ||||||| || || ||| || || || || ||||| | Sbjct 320274 CATTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 320215 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||||||| || |||||| |||| || || ||| ||||||||||||||| | || |||| Sbjct 320214 AGAAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAGG 320155 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 | |||| ||||| ||||| | |||||| |||| || | | |||| | || Sbjct 320154 GCATGCACACAGACTTCGCCTGCCTTCTGTTCTCGCATCTGAAGAACAAGCCGAACCAGG 320095 Query 117228 CGCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | || ||| | ||| ||||||| || ||| | ||||||||| ||| | || || Sbjct 320094 CCCTTGTGCAGAG-CATCATCACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGACAGAC 320036 Query 117287 GCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345 || || || ||| || ||||| | || | ||||| |||||||| || || Sbjct 320035 GCTCTTCC-ATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATT 319977 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGCCCAA 117402 ||||||||| | || ||| | | | ||||| |||| | ||||||| | |||| Sbjct 319976 CGTCGCCGATCGCCTACTGTTGGCAC---TCGGCAACAAGAAGTTCTACAACGCCACCAA 319920 Query 117403 CCCGCTGGACTTTATG 117418 ||| | ||||| ||| Sbjct 319919 CCCCTTCGACTTCATG 319904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || || |||||||||| || | |||| ||| ||||| ||||| || Sbjct 204502 GACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 204561 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | ||||||||| |||||||||||| ||||||||| ||| || || || || Sbjct 204562 GATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGAGCACCCTCCACCTCGT 204617 >seq207 Length=763741 Score = 152 bits (168), Expect = 5e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | || Sbjct 54620 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACCATCACACTCGAAGTGGAATCATCC 54561 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| || | ||||| ||||||||||| ||||||| Sbjct 54560 GACACGATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCA 54502 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| || || || || ||||| Sbjct 54501 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAA 54442 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| ||||| | ||| |||| Sbjct 54441 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCG 54406 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| ||| | Sbjct 54848 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 54789 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 54788 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 54729 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || ||||| ||||| || || | || || || |||||||||| Sbjct 54728 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCCGACTACAAC 54669 Query 40870 ATCCAGAAGGA 40880 |||||||| || Sbjct 54668 ATCCAGAAAGA 54658 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||| ||| |||| || || | |||||| | | | | | ||| Sbjct 55054 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTGAAGA 54995 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | || || || ||||| || | ||||||||||| | || | ||| |||| Sbjct 54994 GCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTCGCAGGCA 54935 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| |||||||| |||||||||||| ||||||||| ||| || | Sbjct 54934 AGCAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGAGCACTCTCC 54875 Query 40892 ATCTAGT 40898 |||| || Sbjct 54874 ATCTCGT 54868 >seq142 Length=380217 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 |||||||| || ||||| ||||| |||||||| |||| ||||| | | ||||| | | Sbjct 250600 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATC 250659 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| ||||| |||||||||| || | Sbjct 250660 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTTTG 250719 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||| |||| || | ||||||||| ||||||||||||||||||| Sbjct 250720 ATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAG 250779 Query 40879 G 40879 | Sbjct 250780 G 250780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217796027680