Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236585.1_202017-07- 28] 218 sequences; 30,882,610 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq168 138 1e-26 seq218 134 2e-25 seq185 122 1e-21 seq156 98.7 1e-14 seq133 98.7 1e-14 seq87 86.0 8e-11 >seq168 Length=161371 Score = 138 bits (152), Expect = 1e-26 Identities = 304/456 (67%), Gaps = 0/456 (0%) Strand=Plus/Minus Query 1573783 GGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACGCCGTCG 1573842 || |||||||||| ||||| | | ||||||||||| ||||||||| | || ||| Sbjct 60956 GGGTCGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAACCATCG 60897 Query 1573843 CCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGGTCCGC 1573902 |||| | | || || ||| ||||||| || | | | |||| || Sbjct 60896 AACGCCTCAAAATCATCGCCAAAGATGGCAACATGCCACACGTAATCATCTCGGGCATGC 60837 Query 1573903 CCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCG 1573962 |||| | ||||| ||||| || || || ||||| ||||| ||||| ||| Sbjct 60836 CCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCGCAGCCT 60777 Query 1573963 CCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCA 1574022 | | || ||||| |||||||||||||| |||||||||||||| |||||||||| || | Sbjct 60776 ACAAAGAAGCCGTCCTCGAACTCAACGCCTCGGACGAGCGCGGAATCGACGTCGTACGAA 60717 Query 1574023 AGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGA 1574082 | |||||| | ||| || | | || || || |||| || || ||| | Sbjct 60716 ACCGAATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGCCGGGCGGCAGAAGATTG 60657 Query 1574083 TCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCA 1574142 | || || || || || || || | || || | || |||||||| ||||| || | Sbjct 60656 TAATTCTAGATGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGCCGAACGA 60597 Query 1574143 TGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCA 1574202 |||||| ||| || |||||| ||||| ||| | || || ||| ||| | ||| Sbjct 60596 TGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGTAACCAATCGAACAAAATCA 60537 Query 1574203 TCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 ||||| | |||||| |||||||| || | |||| Sbjct 60536 TCGAGCCTCTCCAATCGCGCTGCGCAATCTTACGCT 60501 >seq218 Length=763642 Score = 134 bits (148), Expect = 2e-25 Identities = 141/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | |||||| || | ||| ||| | ||||| ||| | | || ||| Sbjct 524601 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 524659 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | | Sbjct 524660 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 524719 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | |||||||||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 524720 TCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAACATTCAGA 524779 Query 1592298 ACG 1592300 ||| Sbjct 524780 ACG 524782 >seq185 Length=938846 Score = 122 bits (134), Expect = 1e-21 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | ||||| || Sbjct 319839 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 319898 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | | ||||| | | Sbjct 319899 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAAC 319958 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| |||||||| || || ||||| || |||||||||| |||||||| || | Sbjct 319959 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 320018 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| || || | || ||| ||||| | ||||||| |||||||||| |||| Sbjct 320019 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATG 320078 Query 868931 AT 868932 || Sbjct 320079 AT 320080 Score = 107 bits (118), Expect = 2e-17 Identities = 176/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | | || Sbjct 320436 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGC 320495 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| || ||||| ||| |||||||| Sbjct 320496 ACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAG 320555 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||| ||| || ||||||||| ||| || ||||| | Sbjct 320556 AATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCG 320615 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || || || | |||||| || ||||||| |||||||||||||||||| Sbjct 320616 TGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTG 320675 Query 869870 TACATCTCCCATA 869882 ||||| | ||||| Sbjct 320676 TACATTTGCCATA 320688 >seq156 Length=245385 Score = 98.7 bits (108), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| ||||| || ||||| |||||| |||||| || ||||||| || ||| Sbjct 20504 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 20563 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | || ||| | ||||| ||||||||||| || || || || Sbjct 20564 CCTTGCTTTGACAAATTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACA 20623 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201 || || ||||| ||||| ||| || |||| ||| Sbjct 20624 AAAGGCTTCGAATTTGGCTCCGGCTTCGGCGGATGC 20659 >seq133 Length=486135 Score = 98.7 bits (108), Expect = 1e-14 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 ||||||| || || ||||| | | ||| || || | ||| |||||| | ||| ||| Sbjct 413403 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 413462 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| | ||||| ||||||||| |||| ||| || ||||| |||| Sbjct 413463 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 413521 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511 ||||| ||||||||||||| ||||||| | ||| || || | | || ||| ||||||| Sbjct 413522 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 413580 Query 1627512 CCAGCGGCCG 1627521 |||| || || Sbjct 413581 CCAGAGGTCG 413590 >seq87 Length=508856 Score = 86.0 bits (94), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||||| ||| |||||| || |||||| ||||| ||||| || ||||| ||||| |||| Sbjct 79456 CGTCGATGTCTGGGTCGTTGATCAGGCCTTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 79515 Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049 |||||||||||||| | |||||| Sbjct 79516 GATAGGCGCGCATGATGATGCAAAG 79540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107121309899106