Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236615.1_202017-07-
28] 174 sequences; 30,259,387 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq163 206 5e-48
seq153 141 2e-28
seq109 125 1e-23
>seq163
Length=1072245
Score = 206 bits (228), Expect = 5e-48
Identities = 182/227 (80%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || |||| |||||||| || |||||||| || |||||||| ||||| ||
Sbjct 360641 CCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 360700
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||||| || || || | |||||| |||||||| ||||| | || ||||| |||||
Sbjct 360701 AGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 360760
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||||| ||||||| ||||| ||||| | |||||| |||
Sbjct 360761 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCCACT 360820
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||| ||||||||||| || |||||
Sbjct 360821 TCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 360867
Score = 156 bits (172), Expect = 8e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || || ||||| |||||||| || |||||
Sbjct 360869 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 360928
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | || ||||| |||||
Sbjct 360929 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 360988
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || |||||||| || ||||| | |||||| ||||||||||| ||| || || ||
Sbjct 360989 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTC-GCTGGACTCGAC 361047
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct 361048 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 361095
Score = 100 bits (110), Expect = 5e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | || || ||| ||| || || ||||| || |||||
Sbjct 361097 CCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 361156
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | ||| ||||| ||||||
Sbjct 361157 AGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGA 361216
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||| || || ||||| ||| || |||||||| || | || || ||
Sbjct 361217 ATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTGTCGATGGTATCGGACGACTCAACC 361276
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||| ||||| || || ||||
Sbjct 361277 TCGAGGGTAATGGTCTTGCCGGTGA 361301
>seq153
Length=1106928
Score = 141 bits (156), Expect = 2e-28
Identities = 300/441 (68%), Gaps = 10/441 (2%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || |||||||||||||| || || |||||||||||||| |||||| |
Sbjct 842208 CATGACACCAGCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 842149
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC---GCCAAACTGCTTGGGGTA 10051
|| |||||| |||||||||||| |||||||| ||| | |||| ||| ||
Sbjct 842148 CAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTT---GTT 842092
Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111
|||||||| | | ||| || || ||||| || ||||| || ||| ||| | |
Sbjct 842091 GCCGAGTGCCAACAGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGC 842032
Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171
|||||| || | | ||| || | ||||| | ||| |||| ||| | | |||
Sbjct 842031 GTTCATCCCCAGAAGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGAC 841972
Query 10172 CGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231
|| || || |||||||| || | | | || | ||||||||| || | ||| |
Sbjct 841971 GGCCTCGGTGATGATGCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGAA 841912
Query 10232 CAGGAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
||| || | || | ||| ||| | |||||| || ||| ||||| |||||| || |
Sbjct 841911 CAGAAGGCAGGCGAAGT-CTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGA 841853
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGC-GCAGAACGACCCG 10349
| || |||| |||||| || || || ||||||||| || || ||| || || ||
Sbjct 841852 ATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCA-AAAGATCCA 841794
Query 10350 GAGAACAGAAGACCCTCCACG 10370
||||| | | |||||| |||
Sbjct 841793 GAGAAGAAGATACCCTCAACG 841773
>seq109
Length=1586495
Score = 125 bits (138), Expect = 1e-23
Identities = 142/188 (76%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 68266 TGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGG 68325
|| || | || |||||||| || |||||||| || | ||||| || |||||||| || |
Sbjct 391880 TGCACACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAG 391939
Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385
|||| || | | || ||||| ||||| || || |||||||| || ||||| |||||
Sbjct 391940 CGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGA 391999
Query 68386 CGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444
| ||||||||||| ||| || || || || | |||||||| || || |||||||||
Sbjct 392000 CATTGTCGATGGTGTC-GCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTC 392058
Query 68445 TTGACGAA 68452
|| |||||
Sbjct 392059 TTTACGAA 392066
Score = 89.7 bits (98), Expect = 9e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 224979 ACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAG 225038
|||||||||||||||| | | |||||| | || || |||| || || || |||||
Sbjct 171219 ACCGCCACTGGATGTATTCGGACGGGGTCTTCTCGAGATGGTGGTCGATGTGCGCGAAAG 171278
Query 225039 CATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC- 225097
| ||||| | ||| || || || ||||| |||| | || ||| ||||
Sbjct 171279 CGTGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTATACGTCGCCGGCAGTCG 171338
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| || | ||| || || ||||| |||| ||| |||| |||||| |||||||| || |||
Sbjct 171339 GGATGAG-CTCACCAGTCAGGACGTTGACGAGAGTAGACTTGCCGGCACCATTTGGCCCA 171397
Query 225158 ATCACGCCAATCCGGGAT 225175
|| ||| |||| || |||
Sbjct 171398 ATGACGGCAATACGAGAT 171415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921620395471280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |