Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236615.1_202017-07- 28] 174 sequences; 30,259,387 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq153 134 2e-25 seq131 134 2e-25 seq110 98.7 1e-14 seq103 98.7 1e-14 seq96 91.5 2e-12 >seq153 Length=1106928 Score = 134 bits (148), Expect = 2e-25 Identities = 307/462 (66%), Gaps = 0/462 (0%) Strand=Plus/Plus Query 1573777 TCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACG 1573836 |||| || | |||||||| ||||| | | ||||||||||| ||||||||| | Sbjct 1045904 TCCCTAGGGTTGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAA 1045963 Query 1573837 CCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGG 1573896 || ||| |||| | | || |||||| ||||||| || | | | | | Sbjct 1045964 CCATCGAACGCCTCAAAATCATCGCCAAAGACGGCAACATGCCACACGTAATCATCTCCG 1046023 Query 1573897 GTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCG 1573956 | |||||| | ||||| ||||| || || || ||||| ||||| |||| Sbjct 1046024 GCATGCCCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCG 1046083 Query 1573957 CGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCG 1574016 | ||| | | || ||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 1046084 CAGCCTACAAAGAAGCCGTCCTCGAACTCAACGCCTCGGACGAGCGCGGAATCGACGTCG 1046143 Query 1574017 TGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACA 1574076 | || || |||||| | ||| || | | || || || |||| || || | Sbjct 1046144 TACGAAACCGAATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGCCGGGCGGCAGA 1046203 Query 1574077 AGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGT 1574136 || | | || || || || || || || | || || | || |||||||| ||||| Sbjct 1046204 AGATTGTAATTCTAGATGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGCC 1046263 Query 1574137 CCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGA 1574196 || ||||||| ||| || |||||| ||||| ||| | || || ||| ||| | Sbjct 1046264 GAACGATGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCTTGTAACCAATCGAACA 1046323 Query 1574197 TGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 |||||||| | |||||| |||||||| || | |||| Sbjct 1046324 AAATCATCGAGCCTCTCCAATCGCGCTGCGCAATCTTACGCT 1046365 Score = 122 bits (134), Expect = 1e-21 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | ||||| || Sbjct 842198 GCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 842139 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | | ||||| | | Sbjct 842138 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAAC 842079 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| |||||||| || || ||||| || |||||||||| |||||||| || | Sbjct 842078 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 842019 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| || || | || ||| ||||| | ||||||| |||||||||| |||| Sbjct 842018 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATG 841959 Query 868931 AT 868932 || Sbjct 841958 AT 841957 Score = 107 bits (118), Expect = 2e-17 Identities = 176/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| | | || Sbjct 841601 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGC 841542 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| || ||||| ||| |||||||| Sbjct 841541 ACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAG 841482 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||| ||| || ||||||||| ||| || ||||| | Sbjct 841481 AATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTCGCTTGTTCCAGTCG 841422 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || || || | |||||| || ||||||| |||||||||||||||||| Sbjct 841421 TGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTG 841362 Query 869870 TACATCTCCCATA 869882 ||||| | ||||| Sbjct 841361 TACATTTGCCATA 841349 >seq131 Length=1325556 Score = 134 bits (148), Expect = 2e-25 Identities = 141/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | |||||| || | ||| ||| | ||||| ||| | | || ||| Sbjct 526211 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 526269 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | | Sbjct 526270 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 526329 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | |||||||||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 526330 TCGCCAACATGATCAAGGGCAAGTCGCCAGAAGAGATCCGAAAGACGTTCAACATTCAGA 526389 Query 1592298 ACG 1592300 ||| Sbjct 526390 ACG 526392 >seq110 Length=241402 Score = 98.7 bits (108), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| ||||| || ||||| |||||| |||||| || ||||||| || ||| Sbjct 224076 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 224017 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | || ||| | ||||| ||||||||||| || || || || Sbjct 224016 CCTTGCTTTGACAAATTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACA 223957 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201 || || ||||| ||||| ||| || |||| ||| Sbjct 223956 AAAGGCTTCGAATTTGGCTCCGGCTTCGGCGGATGC 223921 >seq103 Length=313272 Score = 98.7 bits (108), Expect = 1e-14 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 ||||||| || || ||||| | | ||| || || | ||| |||||| | ||| ||| Sbjct 238566 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 238625 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| | ||||| ||||||||| |||| ||| || ||||| |||| Sbjct 238626 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 238684 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511 ||||| ||||||||||||| ||||||| | ||| || || | | || ||| ||||||| Sbjct 238685 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 238743 Query 1627512 CCAGCGGCCG 1627521 |||| || || Sbjct 238744 CCAGAGGTCG 238753 >seq96 Length=420254 Score = 91.5 bits (100), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||||| ||| |||||| || |||||||||||| ||||| || ||||| ||||| |||| Sbjct 137516 CGTCGATGTCTGGGTCGTTGATCAGGCCCTTCCAGCCGACTGTGGTGCGTGGCTTCTCGA 137575 Query 1727025 CATAGGCGCGCATGACCACGCAAAG 1727049 |||||||||||||| | |||||| Sbjct 137576 GATAGGCGCGCATGATGATGCAAAG 137600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107124920745158