Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236615.1_202017-07-
28] 174 sequences; 30,259,387 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq86 138 1e-27
seq163 131 2e-25
seq109 123 2e-23
>seq86
Length=502408
Score = 138 bits (152), Expect = 1e-27
Identities = 111/134 (83%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || |||||||||||||||||||| |||||||||
Sbjct 229609 CCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 229668
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||||||||| |||| |||||| ||||||| |||
Sbjct 229669 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGA 229728
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||||||
Sbjct 229729 ATTCCCTCCTTGTC 229742
>seq163
Length=1072245
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||| ||||| ||| ||||||||| ||||| || || ||
Sbjct 360640 GCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGA 360699
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| || ||||||||||||||||| || || ||||| ||||||| ||
Sbjct 360700 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGG 360759
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| ||| ||| ||| | | | |||||| || ||||
Sbjct 360760 GATGCCCTCCTTGTCTTGGATCTTTGACTT-GACGTTGTCGATCGTGTCGGATGATTCCA 360818
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | || || || || || || || ||||| |||||||| |||||
Sbjct 360819 CTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 360867
Score = 129 bits (142), Expect = 5e-25
Identities = 119/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || |||||||||||||||||||| ||||||||
Sbjct 361097 CCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 361156
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| |||||||||||||| ||||| |||| ||| || ||||| | |||
Sbjct 361157 AGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGA 361216
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786
| || ||||| ||| ||| || |||||
Sbjct 361217 ATGCCTTCCTTATCCTGGATCTTGCTCTTCA 361247
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || || || ||||| ||||| ||||||||
Sbjct 360869 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 360928
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || |||||||||||||| || || ||||||||||| ||||| | ||
Sbjct 360929 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 360988
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||| || | || | |||||||| ||||| |
Sbjct 360989 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG--ATGGTGTCGCTGGACTCGA 361046
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 361047 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 361095
>seq109
Length=1586495
Score = 123 bits (136), Expect = 2e-23
Identities = 142/189 (75%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726
||| | ||||||| ||||| ||||||||||||||||| | || || | |||||| || |
Sbjct 391880 TGCACACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAG 391939
Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784
|||| |||| ||||| ||||||| || | | |||||||||| ||| || |||
Sbjct 391940 CGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGA 391999
Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844
|| | || | |||||||||||||| ||||| | ||| || || || || || || ||
Sbjct 392000 CATTGTCG--ATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGT 392057
Query 41845 CTTTACGAA 41853
|||||||||
Sbjct 392058 CTTTACGAA 392066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462302994488800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |