Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07- 28] 518 sequences; 31,898,548 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq309 123 3e-23 >seq309 Length=301579 Score = 123 bits (136), Expect = 3e-23 Identities = 618/974 (63%), Gaps = 18/974 (2%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| || |||||||| || || || ||||||| | | | | || | || |||||| Sbjct 53746 GCAAGCGAAGCCAGATTGCAGACAGCGACCTCATCCGGAGCAGAGTACTCCATGATCTCA 53687 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | |||| | |||||| || || | ||| | || || ||||| ||| Sbjct 53686 GTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGGCG 53627 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 || ||||| || |||||||| || || || || || |||| | || | ||| || | | Sbjct 53626 GCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATAC 53567 Query 63123 CAGAC-----GA-CTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGA 63176 || | || | ||| || | | | | | | | |||||| || || | Sbjct 53566 CATATTTTCTGAGCACGAACCGTC-TCACGGCCCT-----TGCCTTCTCTCTCATAACGC 53513 Query 63177 GTATACAA-TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 |||| || || ||||||||| || | |||| || | ||| ||||| | || Sbjct 53512 TCGTACAGCTCCTT-GAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGTTGGG 53454 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 ||||| | | ||| |||| | | || || | |||||||||||| |||||||| Sbjct 53453 GCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCA 53394 Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 ||||| || | ||| | | | | ||| || ||||| ||||| ||| || Sbjct 53393 GAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTC 53334 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 | |||| ||| | || | |||||||| || | ||| ||||| | | | || || || Sbjct 53333 CATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACG 53274 Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 ||||| || ||||| || | ||| | || ||||| || || |||| | |||||| | Sbjct 53273 CTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTAC 53214 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT 63535 || |||||| ||| | || || || ||| || || || |||| | || || Sbjct 53213 AAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTGTG 53154 Query 63536 AA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 || ||| ||||| || || || || | || ||||| | || ||| || | || | Sbjct 53153 AACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTAT 53095 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63654 | ||||| || || ||||| ||||| ||||| | | || ||| | | || Sbjct 53094 CGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCG 53035 Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-A 63713 | | || || ||| | || | || || ||||| || || || | || || | Sbjct 53034 CCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACA 52975 Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 63773 |||| || || ||||| || |||| || || || ||||| || || || ||| Sbjct 52974 TGTAG-TTATATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCGACAGCCACA 52916 Query 63774 CGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGAT 63833 ||||| | ||| || || ||||| || ||| ||| | ||| | | | ||| ||| Sbjct 52915 CGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGAAGGTATGAT 52856 Query 63834 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63893 |||| ||| || || || || || | ||| ||||| || || || | ||| || Sbjct 52855 CGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACAATGGCC 52796 Query 63894 GAATTGAGCTTATC 63907 || || |||| ||| Sbjct 52795 GAGTTCAGCTCATC 52782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813521931040