Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07- 28] 518 sequences; 31,898,548 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq309 122 1e-22 >seq309 Length=301579 Score = 122 bits (134), Expect = 1e-22 Identities = 451/698 (65%), Gaps = 18/698 (3%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| ||||| || || ||||| | | ||| || | | | || || | |||| Sbjct 53470 CCAGGGCATTCGTTGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATA 53411 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| |||||||| ||||| || | ||| | | | | || || ||||| Sbjct 53410 AAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCA 53351 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| ||| || | |||| ||| | || | |||||||| || | ||| ||| Sbjct 53350 TGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATG 53291 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 53290 GCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAG 53231 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| | |||||| | || ||| ||||||| || || || ||| || || || Sbjct 53230 ACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCT 53171 Query 72274 CTGGCACGAATATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 |||| | || ||| || ||| ||||| || || || || | || ||||| | || Sbjct 53170 GTGGCCCTGATGTTGTGAACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGC 53112 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 ||| || | ||||| ||||| || || || || |||||| ||||| | | || Sbjct 53111 ACATATCTTGAGGGTATCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAA 53052 Query 72393 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 ||| || | | || || || || || ||| | || | || || ||||| | Sbjct 53051 GCAG---GATGCTAGCTG-CGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCAT 52996 Query 72449 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCC 72504 | || || | || |||| |||| || || ||||| || |||| ||| || ||| Sbjct 52995 GTGTGAAGTACTTCAACGACATGTAG-TTATATGTCTCGATCGCTGCTTCAATGTCTTCC 52937 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | ||| || || || || |||||||| | ||| || || ||||| || | | |||| Sbjct 52936 CCGTGA---ATGCCGACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTG 52880 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624 || ||| | | | ||| ||| |||| ||| || || || || || | ||| Sbjct 52879 CCATCAATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTG 52820 Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 ||||| || || || | ||| |||| || || | ||| Sbjct 52819 AAGTCGCGGTCATAGACAATGGCCGAGTTCAGCTCATC 52782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134854373680