Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07-
28] 518 sequences; 31,898,548 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq309 122 1e-22
>seq309
Length=301579
Score = 122 bits (134), Expect = 1e-22
Identities = 451/698 (65%), Gaps = 18/698 (3%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| ||||| || || ||||| | | ||| || | | | || || | ||||
Sbjct 53470 CCAGGGCATTCGTTGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATA 53411
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| |||||||| ||||| || | ||| | | | | || || |||||
Sbjct 53410 AAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCA 53351
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| ||| || | |||| ||| | || | |||||||| || | ||| |||
Sbjct 53350 TGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATG 53291
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || ||
Sbjct 53290 GCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAG 53231
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|||| | |||||| | || ||| ||||||| || || || ||| || || ||
Sbjct 53230 ACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCT 53171
Query 72274 CTGGCACGAATATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332
|||| | || ||| || ||| ||||| || || || || | || ||||| | ||
Sbjct 53170 GTGGCCCTGATGTTGTGAACATGA-AGACCAATACCGCCAGCGTTCTTGGAGATCATGGC 53112
Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392
||| || | ||||| ||||| || || || || |||||| ||||| | | ||
Sbjct 53111 ACATATCTTGAGGGTATCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAA 53052
Query 72393 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448
||| || | | || || || || || ||| | || | || || ||||| |
Sbjct 53051 GCAG---GATGCTAGCTG-CGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCAT 52996
Query 72449 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCC 72504
| || || | || |||| |||| || || ||||| || |||| ||| || |||
Sbjct 52995 GTGTGAAGTACTTCAACGACATGTAG-TTATATGTCTCGATCGCTGCTTCAATGTCTTCC 52937
Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564
| ||| || || || || |||||||| | ||| || || ||||| || | | ||||
Sbjct 52936 CCGTGA---ATGCCGACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTG 52880
Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624
|| ||| | | | ||| ||| |||| ||| || || || || || | |||
Sbjct 52879 CCATCAATTCTGAGAAGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTG 52820
Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662
||||| || || || | ||| |||| || || | |||
Sbjct 52819 AAGTCGCGGTCATAGACAATGGCCGAGTTCAGCTCATC 52782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671134854373680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |