Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07-
28] 518 sequences; 31,898,548 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq134 140 2e-28
seq220 129 4e-25
>seq134
Length=3304
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 232 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 173
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 172 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 138
>seq220
Length=349213
Score = 129 bits (142), Expect = 4e-25
Identities = 199/284 (70%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260
|||||||||||||| ||| ||||||| ||||||| ||||| ||||| ||||||||
Sbjct 78736 TTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGGTAGAGGGGAAGGGTAACGGTATC 78677
Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320
|| || ||| | ||||| || | | |||||| | ||||| ||||| | | |||
Sbjct 78676 AAGACTGTCGTCGTCAATCTGGCCAACGTCGCTTACCAGCTCGCCCGCCCGCCAAGCTAT 78617
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
| || || || || | ||| || ||||| ||||| | |||| | ||| ||||
Sbjct 78616 GTCATCAAGTACTTTGGTTTCGAGCTCGGCGCCCAGACCAATATTGACCCCAAGGACGAC 78557
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| ||| | ||||| | ||| | || ||||| |||| |||| || || |||||
Sbjct 78556 CGCTGGATCATCAACGGTGCACATGAGGCTACCAAGTTGCAAGACTACCTCGATGGCTTC 78497
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
|| |||||| || || || ||| ||| | ||||| |||||
Sbjct 78496 ATCAACAAGTTCGTCCTCTGCAAGGACTGCAAGAACCCCGAGAC 78453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945085436458
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |