Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07- 28] 518 sequences; 31,898,548 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq309 271 8e-68 >seq309 Length=301579 Score = 271 bits (300), Expect = 8e-68 Identities = 621/923 (67%), Gaps = 14/923 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||||||||| || ||||| |||| || |||||| Sbjct 52821 AACTACCAATACTTCGGCTTCAAGACTCTGGAGCGATCATACCTTCTCAGAATTGATGGC 52880 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| ||||| ||||||| ||| || | ||||| || || |||| |||||||| | Sbjct 52881 AAGGTTGCCGAGAGACCGCAACAGATGATCATGCGTGTGGCTGTCGGCATTCACGGGGAA 52940 Query 93835 GACAT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGG 93892 ||||| | | | | | | | | | ||||| | ||| | || |||| Sbjct 52941 GACATTGAAGCAGCGATCGAGACATATAACT-ACATGTCGTTGAAGTACTTCACACATG- 52998 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGA 93952 | | || || || |||| || || ||||| | | ||| | | || || ||| || Sbjct 52999 CTTCGCCAACACTTTTCAGTGCTGGTACCCCACAGGCGCAGCTAGCATCCTGCTTCTTGG 53058 Query 93953 TGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 || | | |||| ||| ||| || || | ||| | ||||||| ||||| | | Sbjct 53059 TGGCCATGAAGGATGACAGCATTGATGGTATCTACGATACCCTCAAGATATGTGCCATGA 53118 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 |||| || |||| || || || || | ||| ||| || | | |||| || || | Sbjct 53119 TCTCCAAGAACGCTGGCGGTATTGGTCTTCATGTTCACAACATCAGGGCCACAGGCTCAT 53178 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| |||| || || ||||| |||||||| || || || ||||| || |||| ||||| Sbjct 53179 ACATTGGCGGCACAAACGGCACATCCAACGGTCTTGTACCAATGCTACGAGTCTACAACA 53238 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || || ||||| ||||||||||| | | | ||| |||| || |||| | Sbjct 53239 ACACTGCACGTTACGTTGACCAGGGTGGCAACAAGCGTCCAGGTGCTTTTGCCATCTACC 53298 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGC-TTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| ||||| || || ||||| ||||| || |||||||| || || Sbjct 53299 TTGAGCCGTGGCACGCAGACGT-CATGCAGTTCATGGACCTTCGCAAGAACCATGGAAAG 53357 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | || | || | ||||||||||||||| | || || || |||||| | Sbjct 53358 GAAGAAGTTCGTGCGCGCGATTTGTTCTACGCTCTCTGGATTCCCGATCTCTTTATGCAG 53417 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || ||||| | ||| | | |||| ||| | || ||||| ||||| || || ||||| Sbjct 53418 CGTGTCGAACAGAACGGCACTTGGACTCTAATGTGCCCCAACGAATGCCCTGGTCTGTCG 53477 Query 94372 GACGTTTGTGGATCGCGTTTTGAA-GACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || | || | || || || || |||| | ||||| || | ||||||| Sbjct 53478 GATGTCTACGG-TGACGAGTTCAAGGAGCTGTACGAGCGTTATGAGAGAGAAGGCAAGGG 53536 Query 94431 CAG---GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 | | || |||| |||| ||| | ||| || || | || | ||| || Sbjct 53537 CCGTGAGACGGTT---CGTGCTCAGAAAATATGGTATGCTATTCTCGAGGCGCAGACCGA 53593 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 ||| || || || | ||| ||| ||||||| | | |||| |||| ||||||| || | Sbjct 53594 GACCGGCACACCTTTCATTCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAA 53653 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 || || ||||||||||| ||| ||||||| ||||| | ||||| || ||||||| Sbjct 53654 TCTTGGCACCATCAAGAGCTCTAATTTGTGCACTGAGATCATGGAGTACTCTGCTCCGGA 53713 Query 94608 CGAGATTGCTGTGTGTAACCTGG 94630 ||| | ||||| || || |||| Sbjct 53714 TGAGGTCGCTGTCTGCAATCTGG 53736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719996667280