Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07-
28] 518 sequences; 31,898,548 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq309 134 2e-26
>seq309
Length=301579
Score = 134 bits (148), Expect = 2e-26
Identities = 444/673 (66%), Gaps = 22/673 (3%)
Strand=Plus/Minus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||||| |||||| |||||||| ||| || ||| | || | || || ||||||
Sbjct 53699 CTCCATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCT 53640
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001
||||||||| || ||||||||||| ||||| || | ||| |||| |||| | ||
Sbjct 53639 CTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTC 53580
Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC-CCTTGAGAC 205060
| ||||| ||| | || |||| || || |||| | | |||| |
Sbjct 53579 G-AGAATAGCATACCATATTTTCTGAGCACGAACCGTCT-CACGGCCCTTGCCTTCTCTC 53522
Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120
|| || ||||||| || || || |||||| || ||| ||| || || |||
Sbjct 53521 TCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCAT 53462
Query 205121 TTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179
| ||||| ||||| |||| ||| | | | || | || || | || |||||| || ||
Sbjct 53461 TCGTTGGGGCACATTAGAGTCCAAGTGCCGTTC-TGTTCGACACGCTGCATAAAGAGATC 53403
Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239
| ||||| || |||| |||| ||| || || | || | | || | |||| |||||||
Sbjct 53402 GGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTT 53343
Query 205240 TTTCAAGTCCAGCCAAGCCGCA--ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297
| ||||| | | ||| | ||| |||||||||||||| | | | ||| |
Sbjct 53342 GCGAAGGTCCATGAA--CTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAA 53285
Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCAC----CATGCGAGTCATCGCGTTGAAAAC 205353
|| ||||| | |||||| ||||||||||| || | ||| ||| | |||| | ||
Sbjct 53284 GCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGTGC-AGTGTT---GTTGTAGAC 53229
Query 205354 TCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTC 205413
||| ||||| || || |||||||||| || ||||| |||| | ||| ||||||
Sbjct 53228 TCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGT 53169
Query 205414 AGCCCTCACGTTG-GAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472
||||| | |||| || | | ||||| ||||||| ||||| |||| ||| |
Sbjct 53168 GGCCCTGATGTTGTGAACATGAAG-ACCAATACCGCCAGCGTTCTTGGAGATCATGGCAC 53110
Query 205473 A-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531
| ||||| || || |||||| || | ||| || ||| || | ||||| ||
Sbjct 53109 ATATCTTG-AGGGTATCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAG 53051
Query 205532 CACGAAGCCAGCT 205544
|| || || ||||
Sbjct 53050 CAGGATGCTAGCT 53038
Score = 86.0 bits (94), Expect = 1e-11
Identities = 222/336 (66%), Gaps = 2/336 (1%)
Strand=Plus/Minus
Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244
||||||| || ||| || || || | || ||| | || | | | | |||| | ||| ||
Sbjct 54316 GGGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTAT 54257
Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304
|| ||||| |||||| ||| | ||||| | ||| ||| || ||||| || ||
Sbjct 54256 GGCTCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 54197
Query 204305 AGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCG 204364
| ||| || |||||||||||||||| | || | ||| ||| || | || ||||||
Sbjct 54196 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTGAGTGCGGCCCAGTCC 54137
Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424
| | | || || ||||||||||||| |||| | ||| || |||||
Sbjct 54136 CAGAGGTCGGTAGGAGTCTTGCCCCACATGTCGTACTGGAGCTCGCCCTGCGATACTGGA 54077
Query 204425 CTGCCCTTGTACGTCGGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483
||| ||| ||| ||||| | || | || || || |||| ||| || || | |
Sbjct 54076 GAGCCTGGGTATGTCTCGTAAGGACCGAGCTTC-TCAGCAAGCTCGCATGAAGCCTCAAG 54018
Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519
|| || || ||||||||||| ||||| | |||
Sbjct 54017 AGCAGCATGATAGATGGTCTCAAAAATCTGGATGTT 53982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795150051370080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |