Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07-
28] 518 sequences; 31,898,548 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq309 147 6e-30
seq491 118 3e-21
seq4 96.9 1e-14
>seq309
Length=301579
Score = 147 bits (162), Expect = 6e-30
Identities = 555/865 (64%), Gaps = 7/865 (1%)
Strand=Plus/Minus
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
|||||| ||||| ||||| |||||||||||||| | |||||||||||| || | |
Sbjct 53692 ATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGG 53633
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| || |||||||| |||||| | || || || ||||| |||| || || |||||
Sbjct 53632 TTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATA 53573
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819
||| | | | ||| || || | ||||||| |||||| |
Sbjct 53572 GCATACCATATTTTCTGAGCACGAACCGTCTCACGGCCCTTGCCTTCTCTCTCATAACGC 53513
Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879
|||||| | | || |||||||| ||| ||| |||||||| | | ||||
Sbjct 53512 TCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGTTGGGG 53453
Query 155880 CAAAACAGCGACCAAATTTTATTACCGATT-ACACGCTCCATAAATACATCACTCGCCCA 155938
|| | || | |||| | || | | | ||||||| |||||| | ||| |||
Sbjct 53452 CACATTAGAGTCCAAGTGCCGTT-CTGTTCGACACGCTGCATAAAGAGATCGGGAATCCA 53394
Query 155939 AATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTC 155998
| ||| ||||| | || | || || || | || || ||||| || || ||
Sbjct 53393 GAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTC 53334
Query 155999 TAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATT 156055
| ||| | | | || | || ||||| || || || |||||| ||| |
Sbjct 53333 CATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACG 53274
Query 156056 CCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAAT 156115
| | ||||||||||| || || || || ||||| || ||| |||| | |||||| || |
Sbjct 53273 CTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTGGTAC 53214
Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATG 156175
|| ||| ||||| ||||| || || |||| ||| | || || | | | | || ||
Sbjct 53213 AAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTGTG 53154
Query 156176 AATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATT 156235
|| ||| || |||||||| || | || || || || ||| ||| | ||||
Sbjct 53153 AACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATC 53094
Query 156236 GAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGG 156295
| | ||||| ||||| ||||| | ||| | | | |||| || || || |
Sbjct 53093 GTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGC 53034
Query 156296 TCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355
|||| || ||||| |||| ||||| || | ||||| | || ||||| |||||
Sbjct 53033 CTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACAT 52974
Query 156356 ATAATCGTATGTCTCCTTAATCTTC-TCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414
|| | |||||||| | || | |||| | ||||||||| | || || || |
Sbjct 52973 GTAGTTATATGTCTCGAT-CGCTGCTTCAATGTCTTCCCCGTGAATGCCGACAGCCACAC 52915
Query 156415 TCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGC 156474
||| ||| || || || | ||| ||| | |||||||||| |||||||||| |
Sbjct 52914 GCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGAAGGTATGATC 52855
Query 156475 GTTCCAGAGTTTTAAACCCGAAATA 156499
| |||||||| || || ||||| ||
Sbjct 52854 GCTCCAGAGTCTTGAAGCCGAAGTA 52830
>seq491
Length=113503
Score = 118 bits (130), Expect = 3e-21
Identities = 173/241 (72%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 302563 ATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTT 302622
||||| | ||||||| | ||| | || ||||||||| || |||||||| | ||
Sbjct 21433 ATCATGACTTCTTCCAAAGCCTTCACTAGACGACGCTGGATGTAACCAGTCTCTGCAGTC 21492
Query 302623 TTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCC 302682
|| ||||| |||||||| ||||| ||||||||||||| || |||||||| | |||||
Sbjct 21493 TTGACAGCGGTATCAATGAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCTTGG 21552
Query 302683 GGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGT 302740
||| || |||| | | | | ||| |||| |||||||| | | | ||||| | ||
Sbjct 21553 GGT-GTCAAGCCACGC-AGGTATGAGTTCTCGACGAAACCTCTAGATGCAGGCGAGTAGT 21610
Query 302741 CGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800
|| ||||| ||| || |||||| | || || ||||| | |||| |||||| || |
Sbjct 21611 CGTCCTTGGGAAAATGCGGCAGGACTCGGTACTTGAAGCCGAACGGGAGACGCTTGCCTT 21670
Query 302801 C 302801
|
Sbjct 21671 C 21671
>seq4
Length=52262
Score = 96.9 bits (106), Expect = 1e-14
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || |||||||| |||||| || || || |||||||| ||||| ||| | ||
Sbjct 34324 TGAGCAATTGTCATACGCGAGGGAATGGCGTGAGGGTTGATGATAATGTCCGGTGTGAGG 34383
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
|| || || ||||| ||||| || | || || ||| || | |||| || ||||| ||
Sbjct 34384 CCGTCCGCTGTGAATGGCATGTCTTCTTG-TCGATAGGTGATACCAACGGTACCCTTCTG 34442
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||||||||| ||||||||||||||
Sbjct 34443 TCCGTGACGAGATGCAAACTTATCACCAAT 34472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471807831730566
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |