Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07-
28] 518 sequences; 31,898,548 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq474 147 3e-29
seq11 143 3e-28
seq454 102 1e-15
seq309 98.7 1e-14
>seq474
Length=994170
Score = 147 bits (162), Expect = 3e-29
Identities = 306/456 (67%), Gaps = 0/456 (0%)
Strand=Plus/Minus
Query 1573783 GGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACGCCGTCG 1573842
|| |||||||||| ||||| | | ||||||||||| ||||||||| | || |||
Sbjct 68379 GGGTCGAAAAGTACCGCCCCGTCTTCCTCGACGACATAGTCGGCAACACCGAAACCATCG 68320
Query 1573843 CCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGGTCCGC 1573902
|||| | | || || ||| ||||||| || | | | |||| ||
Sbjct 68319 AACGCCTCAAAATCATCGCCAAAGATGGCAACATGCCACACGTAATCATCTCGGGCATGC 68260
Query 1573903 CCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCG 1573962
|||| | ||||| ||||| || || || ||||| ||||| ||| | |||
Sbjct 68259 CCGGAATCGGCAAAACCACCTCAGTCCTCTGCCTCGCGCGCCAACTCTTAGGCCCAGCCT 68200
Query 1573963 CCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCA 1574022
| | || ||||| |||||||||||||| || ||||||||||| |||||||||| || |
Sbjct 68199 ACAAAGAAGCCGTCCTCGAACTCAACGCCTCCGACGAGCGCGGAATCGACGTCGTACGAA 68140
Query 1574023 AGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGA 1574082
| ||||||| | ||| || | | || || || |||| || || ||| |
Sbjct 68139 ACCGCATCAAGGGCTTCGCGCAGAAAAAGGTCACACTCCCCGCCGGGCGGCAGAAGATTG 68080
Query 1574083 TCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCA 1574142
| || || ||||| || || || | || || | || |||||||| ||||| || |
Sbjct 68079 TAATTCTAGACGAAGCAGATAGCATGACTTCAGGAGCGCAGCAGGCACTGCGCCGAACGA 68020
Query 1574143 TGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCA 1574202
|||||| ||| || |||||| ||||| ||| | || |||||| ||| | |||
Sbjct 68019 TGGAAATCTACAGCAGCACGACCCGCTTCGCCTTCGCCTGCAACCAATCGAACAAAATCA 67960
Query 1574203 TCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
||||| | |||||| |||||||| || ||||||
Sbjct 67959 TCGAGCCTCTCCAATCGCGCTGCGCAATCTTGCGCT 67924
Score = 116 bits (128), Expect = 5e-20
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| || ||| |||||| |||||||||||||| | ||||| ||
Sbjct 270491 GCCTTCTGGTATTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATG 270550
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | | ||||| | |
Sbjct 270551 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCCAAC 270610
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| ||||| |||||||| || || ||||| || |||||||||| |||||||| || |
Sbjct 270611 AGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGA 270670
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||| || || | || ||| ||||| | ||||||| |||||||||| ||||
Sbjct 270671 AGCTTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATG 270730
Query 868931 AT 868932
||
Sbjct 270731 AT 270732
>seq11
Length=586967
Score = 143 bits (158), Expect = 3e-28
Identities = 143/183 (78%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177
||||||| | |||||| || | ||| ||| | ||||| ||| | | || |||
Sbjct 54033 CGACATCGAGGACTGGGACCAGAAATTTATGC-AGGTCGATCAGGAGATGTTGTTCGAGA 53975
Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237
| |||||||||||||||||| | || |||||| |||| ||||| | || |||||| | |
Sbjct 53974 TCATCCTCGCCGCCAACTACATGGATATCAAGGCTCTTCTCGACGTCGGCTGCAAGACAG 53915
Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297
| ||||||||||||||||||||||||||||| |||||||| ||||| || |||||| ||
Sbjct 53914 TCGCCAACATGATCAAGGGCAAGTCGCCCGAAGAGATCCGAAAGACGTTCAACATCCAGA 53855
Query 1592298 ACG 1592300
|||
Sbjct 53854 ACG 53852
>seq454
Length=207563
Score = 102 bits (112), Expect = 1e-15
Identities = 117/156 (75%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
|||||||| ||||| || ||||| |||||| |||||| || ||||||| || |||
Sbjct 27138 GACAGCATTGGCGGAACCGTGACATGCGTGATCCGCAACTGTCCTTCAGGCCTGGGAGAG 27197
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| |||||||||||| | || ||| | ||||| ||||||||||| || || || ||
Sbjct 27198 CCTTGCTTTGACAAGTTGGAAGCCACACTCGCACACGCCATGCTCAGCATACCCGCAACG 27257
Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGC 19201
|| || ||||| ||||| ||| || |||| |||
Sbjct 27258 AAAGGCTTCGAATTTGGCTCCGGCTTCGGCGGATGC 27293
>seq309
Length=301579
Score = 98.7 bits (108), Expect = 1e-14
Identities = 139/190 (73%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
||||||| || || ||||| | | ||| || || | ||| |||||| | ||| |||
Sbjct 54315 GGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTATG 54256
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| | ||||| ||||||||| |||| ||| || ||||| ||||
Sbjct 54255 GC-TCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 54197
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511
||||| ||||||||||||| ||||||| | ||| || || | | || ||| |||||||
Sbjct 54196 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTG-AGTGCGGCCCAGTC 54138
Query 1627512 CCAGCGGCCG 1627521
|||| || ||
Sbjct 54137 CCAGAGGTCG 54128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107096690494206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |