Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236645.1_202017-07-
28] 518 sequences; 31,898,548 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq474 154 2e-32
seq309 123 3e-23
>seq474
Length=994170
Score = 154 bits (170), Expect = 2e-32
Identities = 346/516 (67%), Gaps = 8/516 (2%)
Strand=Plus/Plus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || |||||||| |||| ||| || |||||||| || ||||| || || || ||
Sbjct 270827 TCGTTCGAGAATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCA 270886
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
||||||||||| ||||| || || || ||||| |||||||| | || | || |
Sbjct 270887 AAAGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAATGCAATGAGACGGAGGGCGAAT 270946
Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
| | | |||| ||||| || ||||| ||||||||| | | || ||
Sbjct 270947 GTCGAGTTCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGG 271006
Query 48360 ATTGTTTCTATAGCATTAAAGAGAAA-GtttttttCATTGCTATCTTTAACGTAAGTATC 48418
|| | || || ||||| || || | ||| | | ||| || | | ||| |||||
Sbjct 271007 ATGTTGTCGATGGCATTGAACAGGTATGTTCGCTGCTTTGGC-TCGCTGATGTATGTATC 271065
Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478
|| | ||| ||| | |||||||| || || || || ||||| || ||||| ||
Sbjct 271066 GATGAGAAGGGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAA 271125
Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538
|||| || || | |||||| ||||| | | || || || | | ||||| || ||
Sbjct 271126 GCATCGTGCCTCCGGGATCTGCACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGAC 271185
Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598
|| ||||| || || || ||||| | || ||| || || || ||||| |
Sbjct 271186 AATGCCATCGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTC 271245
Query 48599 AGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655
| ||| || |||||||| | || ||| || || | ||| | || |||||||||||
Sbjct 271246 GTTGAGTCGCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCA 271305
Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
||||| ||||| || ||||| ||||| | ||||||
Sbjct 271306 GAATGAGGCCTCGGCCTTTTTGTACATTTGCCATAT 271341
>seq309
Length=301579
Score = 123 bits (136), Expect = 3e-23
Identities = 588/924 (64%), Gaps = 18/924 (2%)
Strand=Plus/Minus
Query 77730 ATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTT 77789
|| ||||| || || | |||| | ||||| ||||| ||||| | |||||||||||
Sbjct 53695 ATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGGTTGCTCTTG 53636
Query 77790 TTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATA 77849
||| | |||||| || ||||| || || || ||||| || |||| | |||| |
Sbjct 53635 CGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGA 53576
Query 77850 ATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTA-TCGCCTCTCTCTTTCAT 77907
|||| | ||| | ||| ||| | | | | | |||| ||||| ||||
Sbjct 53575 ATAGCATACCATATTT-TCTGAGCACGAACCGTCTCACGGCCCTTGCCT-TCTCTCTCAT 53518
Query 77908 ATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCAT 77967
| | || ||| | || || || || | ||||| || ||||||||||| |
Sbjct 53517 AACGCTCGTACAGCTCCTTGAACTCGTCACCGTAGACATCCGACAGACCAGGGCATTCGT 53458
Query 77968 TTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTA 78027
| |||||||| | | ||| || | | | || || | |||||||||||| || |
Sbjct 53457 TGGGGCACATTAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAA 53398
Query 78028 TCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAA 78087
|||| ||||| || | ||| || | | | |||||| ||||| ||||| ||
Sbjct 53397 TCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAA 53338
Query 78088 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAG 78147
| || | |||| ||| | || | ||||| || || || || || || | | | || |
Sbjct 53337 GGTCCATGAACTGCATGACGTCTGCGTGCCACGGCTCAAGGTAGATGGCAAAAGCACCTG 53278
Query 78148 GTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTG 78207
| || || || || ||||| || | || | || ||||| || || |||| | |||||
Sbjct 53277 GACGCTTGTTGCCACCCTGGTCAACGTAACGTGCAGTGTTGTTGTAGACTCGTAGCATTG 53218
Query 78208 GAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATAT 78267
| | || |||||| ||||| || ||||| || ||| || || | || | || |
Sbjct 53217 GTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGT 53158
Query 78268 TACTA--ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAA 78325
| | ||| | | || || || || || |||| || || | || || || |
Sbjct 53157 TGTGAACATGAAGA--CCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAG 53100
Query 78326 TGTATCGTAGATACCCTCTATACTGTCATCCATCATG----TTAAGAAGAAAACAGCTAG 78381
|||||||||||||| || || ||||||||| ||||| |||||| | |||||
Sbjct 53099 GGTATCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG 53040
Query 78382 ACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATT 78441
|| || || || ||| | || | ||| || || ||||| || || | |
Sbjct 53039 ----CTGCGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACT 52984
Query 78442 TTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500
| || | |||| || ||||| || || |||| ||| ||||| ||||| ||
Sbjct 52983 TCAACGACATGTAG-TTATATGTCTCGATCGCTGCTTCAATGTCTTCCCCGTGAATGCCG 52925
Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAAC 78560
|| || |||||||| | ||| || || ||||| || | ||| || ||| | |
Sbjct 52924 ACAGCCACACGCATGATCATCTGTTGCGGTCTCTCGGCAACCTTGCCATCAATTCTGAGA 52865
Query 78561 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAA 78620
| ||||||| |||| ||| || || || || || | ||| ||||| | || ||
Sbjct 52864 AGGTATGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATAG 52805
Query 78621 ATAATAACAGAATTTAGTTTATCT 78644
| ||| | || || || | ||||
Sbjct 52804 ACAATGGCCGAGTTCAGCTCATCT 52781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694664302019520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |