Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236655.1_202017-07- 28] 255 sequences; 30,221,182 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq122 129 9e-25 >seq122 Length=596269 Score = 129 bits (142), Expect = 9e-25 Identities = 439/669 (66%), Gaps = 14/669 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||||| |||||| |||||||| ||| || ||| | || | || || ||| || Sbjct 542072 CTCCATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTGCT 542131 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||||||||| || ||||||||||| ||||| || | ||| |||| |||| | || Sbjct 542132 CTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTC 542191 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC-CCTTGAGAC 205060 | ||||| ||| | || |||| || || |||| | | |||| | Sbjct 542192 G-AGAATAGCATACCATATTTTCTGAGCACGAACCGTCT-CACGGCCCTTGCCTTCTCTC 542249 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 || || ||||||| || || || |||||| || ||| ||| || || ||| Sbjct 542250 TCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAACATCCGACAGACCAGGGCAT 542309 Query 205121 TTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | ||||| |||||||||| ||| | | | || | || || | || |||||| || || Sbjct 542310 TCGTTGGGGCACATCAGAGTCCAAGTGCCGTTC-TGTTCGACACGCTGCATAAAGAGATC 542368 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 | ||||| || |||| |||| ||| || || | || | | || | |||| ||||||| Sbjct 542369 GGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTT 542428 Query 205240 TTTCAAGTCCAGCCAAGCCGCA--ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | ||||| | | ||| | ||| || ||||||||||| | | | ||| | Sbjct 542429 GCGAAGGTCCATGAA--CTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCAAAA 542486 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || ||||| | |||||| ||||||||||| || |||| | ||| | ||||| Sbjct 542487 GCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTATAGACTCGT 542546 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417 ||||| || || |||||||||| || ||||| |||| | ||| |||||| ||| Sbjct 542547 AGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCC 542606 Query 205418 CTCACGTTG-GAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CT 205475 || | |||| || | | ||||| ||||||| ||||| |||| ||| || | Sbjct 542607 CTGATGTTGTGAACATGAAG-ACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATAT 542665 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535 |||| || || |||||| || | ||| || ||| || | ||||| |||| | Sbjct 542666 CTTG-AGGGTATCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGG 542724 Query 205536 AAGCCAGCT 205544 | || |||| Sbjct 542725 ATGCTAGCT 542733 Score = 84.2 bits (92), Expect = 3e-11 Identities = 218/330 (66%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244 ||||||| || ||| || || || | || ||| | || | | | | |||| | ||| || Sbjct 541455 GGGTTGACGACCTGGAACTCGCCAGCCAACACACGACGAGAGTAAATGTTGCTTGTGTAT 541514 Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304 || ||||| |||||| ||| | ||||| | ||| ||| || ||||| || || Sbjct 541515 GGCTCGAAGCACTCGTTAAAGCCCATGATCTGCGAGGTCGAGGCTGTTGGCATCGGCGCA 541574 Query 204305 AGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCG 204364 | ||| || |||||||||||||||| | || | ||| ||| || | || |||||| Sbjct 541575 ACGAGAAGCGAGTTGCGCACACCGTGCTGGGCGATCTTGCCCTTGAGTGCGGCCCAGTCC 541634 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | | | || || ||||||||||||| |||| | ||| || ||||| Sbjct 541635 CAGAGGTCGGTAGGAGTCTTGCCCCACATGTCGTACTGGAGCTCGCCCTGCGATACTGGA 541694 Query 204425 CTGCCCTTGTACGTCGGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483 ||| ||| ||| ||||| | || | || || || |||| ||| || || | | Sbjct 541695 GAGCCTGGGTATGTCTCGTAAGGACCGAGCTTC-TCAGCAAGCTCGCATGAAGCCTCAAG 541753 Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513 || || || ||||||||||| ||||| Sbjct 541754 AGCAGCATGATAGATGGTCTCAAAAATCTG 541783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152665442800