Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236655.1_202017-07-
28] 255 sequences; 30,221,182 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq177 154 2e-32
seq122 147 3e-30
>seq177
Length=464056
Score = 154 bits (170), Expect = 2e-32
Identities = 346/516 (67%), Gaps = 8/516 (2%)
Strand=Plus/Minus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || |||||||| |||| ||| || |||||||| || ||||| || || || ||
Sbjct 196238 TCGTTCGAGAATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCA 196179
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
||||||||||| ||||| || || || ||||| |||||||| | || | || |
Sbjct 196178 AAAGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAATGCAATGAGACGGAGGGCGAAT 196119
Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
| | | |||| ||||| || ||||| ||||||||| | | || ||
Sbjct 196118 GTCGAGTTCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGG 196059
Query 48360 ATTGTTTCTATAGCATTAAAGAGAAA-GtttttttCATTGCTATCTTTAACGTAAGTATC 48418
|| | || || ||||| || || | ||| | | ||| || | | ||| |||||
Sbjct 196058 ATGTTGTCGATGGCATTGAACAGGTATGTTCGCTGCTTTGGC-TCGCTGATGTATGTATC 196000
Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478
|| | ||| ||| | |||||||| || || || || ||||| || ||||| ||
Sbjct 195999 GATGAGAAGGGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAA 195940
Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538
|||| || || | |||||| ||||| | | || || || | | ||||| || ||
Sbjct 195939 GCATCGTGCCTCCGGGATCTGCACCTCAGAGCTGAAGCGCTCGACGAGGTTCTCGTTGAC 195880
Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598
|| ||||| || || || ||||| | || ||| || || || ||||| |
Sbjct 195879 AATGCCATCGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTC 195820
Query 48599 AGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655
| ||| || |||||||| | || ||| || || | ||| | || |||||||||||
Sbjct 195819 GTTGAGTCGCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCA 195760
Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
||||| ||||| || ||||| ||||| | ||||||
Sbjct 195759 GAATGAGGCCTCGGCCTTTTTGTACATTTGCCATAT 195724
>seq122
Length=596269
Score = 147 bits (162), Expect = 3e-30
Identities = 528/815 (65%), Gaps = 18/815 (2%)
Strand=Plus/Plus
Query 77730 ATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTT 77789
|| ||||| || || | |||| | ||||| ||||| ||||| | || ||||||||
Sbjct 542076 ATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTGCTCTTG 542135
Query 77790 TTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATA 77849
||| | |||||| || ||||| || || || ||||| || |||| | |||| |
Sbjct 542136 CGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGA 542195
Query 77850 ATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTA-TCGCCTCTCTCTTTCAT 77907
|||| | ||| | ||| ||| | | | | | |||| ||||| ||||
Sbjct 542196 ATAGCATACCATATTT-TCTGAGCACGAACCGTCTCACGGCCCTTGCCT-TCTCTCTCAT 542253
Query 77908 ATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCAT 77967
| | || ||| | || || || || ||||||| || ||||||||||| |
Sbjct 542254 AACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAACATCCGACAGACCAGGGCATTCGT 542313
Query 77968 TTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTA 78027
| |||||||||| | ||| || | | | || || | |||||||||||| || |
Sbjct 542314 TGGGGCACATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAA 542373
Query 78028 TCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAA 78087
|||| ||||| || | ||| || | | | |||||| ||||| ||||| ||
Sbjct 542374 TCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAA 542433
Query 78088 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAG 78147
| || | |||| ||| | || | |||||| || || || || || || | | | || |
Sbjct 542434 GGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACCTG 542493
Query 78148 GTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTG 78207
| || || || || ||||| || | || | || ||||| ||||| |||| | |||||
Sbjct 542494 GACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTG 542553
Query 78208 GAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATAT 78267
| | || |||||| ||||| || ||||| || ||| || || | || | || |
Sbjct 542554 GTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGT 542613
Query 78268 TACTA--ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAA 78325
| | ||| | | || || || || || |||| || || | || || || |
Sbjct 542614 TGTGAACATGAAGA--CCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAG 542671
Query 78326 TGTATCGTAGATACCCTCTATACTGTCATCCATCATG----TTAAGAAGAAAACAGCTAG 78381
|||||||||||||| || || ||||||||| ||||| |||||| | |||||
Sbjct 542672 GGTATCGTAGATACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG 542731
Query 78382 ACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATT 78441
|| || || || ||| | || | ||| || || ||||| || || | |
Sbjct 542732 ----CTGCGCCTGTGGGGTACCAGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACT 542787
Query 78442 TTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500
| || | |||| |||||||| ||||| |||| ||| ||||| |||||| ||
Sbjct 542788 TCAACGACATGTAG-TTGTATGTCTCAATCGCTGCTTCAATGTCTTCCCCATGAATGCCG 542846
Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535
|| || |||||||| | ||| || || ||||| ||
Sbjct 542847 ACAGCCACACGCATGATCATCTGTTGCGGTCTCTC 542881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694666585743200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |