Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq4710 116 4e-22 seq2278 98.7 1e-16 seq1350 91.5 1e-14 seq3422 80.6 3e-11 >seq4710 Length=2014 Score = 116 bits (128), Expect = 4e-22 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 14529 GGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC 14588 || ||||| |||||||||||||| ||||||||||||||||||||| | |||||||| Sbjct 1824 GGTACAGTGAAATGGTTTAACGCGGATAAAGGATTTGGCTTTATCGAAACTGAAGAAGGA 1765 Query 14589 AAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAA 14648 | ||| | |||| ||| ||| ||||| ||| || || | |||||| | |||||| Sbjct 1764 ACAGACGTATTCGTTCATTTCAGTGCAATTCAAGGCGACGGCTACAAATCTTTGGATGAA 1705 Query 14649 GGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAATATC 14708 || ||| || ||||||| || ||||| | ||||| | ||||| | || | Sbjct 1704 GGACAACGTGTCCAATTTGAAGTAACTCAAGGTAACCGTGGACCACAAGCTGAGAACGTT 1645 Query 14709 ACAAAAGCATAATTATATT 14727 || |||| |||||||||| Sbjct 1644 ACTAAAGTTTAATTATATT 1626 >seq2278 Length=1248 Score = 98.7 bits (108), Expect = 1e-16 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 14526 AATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTA--TCACTTCAGAAG 14583 || || ||||| ||||||||||||||||| ||||| | |||||||| ||| || |||| Sbjct 835 AAAGGTACAGTTAAATGGTTTAACGCAGAAAAAGGCTATGGCTTTATTTCAGTT--GAAG 778 Query 14584 AAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTG 14643 ||| | || | |||| || ||||| ||||||||| || || || ||| || | | Sbjct 777 GCGGCGAGGACGTATTCGTACATTTCTCCGCAATCCAAGGCGACGGCTTTAAAACATTGG 718 Query 14644 ATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700 | ||||||||| || ||||| || | || || | ||||||| |||||||| Sbjct 717 AAGAAGGTCAAGCGGTAGAATTCGAAATCACTGATGGAAACCGTGGTCCTCAAGCAG 661 >seq1350 Length=2764 Score = 91.5 bits (100), Expect = 1e-14 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14525 AAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTTCAGAA 14582 ||| ||||||||||||||||| ||||| |||||||| || || || ||| | || ||| Sbjct 2646 AAACGGAACAGTAAAATGGTTCAACGCTGATAAAGGCTTCGGTTTCATCGAAGTT--GAA 2589 Query 14583 GAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTT 14642 | || ||||| | |||| |||||| || || | || || |||||| | || Sbjct 2588 GGCGGAGAAGATGTATTCGTACACTTCAGCGCTATTACAGGCGAAGGCTTCAAAACGCTG 2529 Query 14643 GATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700 || ||||||||| || ||||| | ||| | |||| | ||||||| |||||||| Sbjct 2528 GACGAAGGTCAACGCGTGCAATTTAAAATTGTACAAGGAAACCGTGGTCCTCAAGCAG 2471 >seq3422 Length=1262 Score = 80.6 bits (88), Expect = 3e-11 Identities = 118/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGA 14593 |||||||||||| |||||||| ||||| | || || || | ||||| ||| || Sbjct 213 AGTAAAATGGTTCAACGCAGAAAAAGGTTACGGTTTCATTGAAACTGAAGACGGCGGCGA 154 Query 14594 TTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGTCA 14653 | |||| || ||||| ||||| ||||| || ||||||||| | | || |||||||| Sbjct 153 CGTATTCGTACATTTCTCCGCAATTCAATCCGAAGGATTCAAAACTTTGGAAGAAGGTCA 94 Query 14654 AAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700 | || ||||| || | | ||||| ||||| | ||||||| Sbjct 93 ATCCGTAGAATTCGACATCGTCGAAGGCGCGCGTGGACCGCAAGCAG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48450714649188