Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07-
28] 6,578 sequences; 35,996,854 total letters
Query= NC_002671.1
Length=15179
Score E
Sequences producing significant alignments: (Bits) Value
seq4710 116 4e-22
seq2278 98.7 1e-16
seq1350 91.5 1e-14
seq3422 80.6 3e-11
>seq4710
Length=2014
Score = 116 bits (128), Expect = 4e-22
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 14529 GGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC 14588
|| ||||| |||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 1824 GGTACAGTGAAATGGTTTAACGCGGATAAAGGATTTGGCTTTATCGAAACTGAAGAAGGA 1765
Query 14589 AAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAA 14648
| ||| | |||| ||| ||| ||||| ||| || || | |||||| | ||||||
Sbjct 1764 ACAGACGTATTCGTTCATTTCAGTGCAATTCAAGGCGACGGCTACAAATCTTTGGATGAA 1705
Query 14649 GGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAATATC 14708
|| ||| || ||||||| || ||||| | ||||| | ||||| | || |
Sbjct 1704 GGACAACGTGTCCAATTTGAAGTAACTCAAGGTAACCGTGGACCACAAGCTGAGAACGTT 1645
Query 14709 ACAAAAGCATAATTATATT 14727
|| |||| ||||||||||
Sbjct 1644 ACTAAAGTTTAATTATATT 1626
>seq2278
Length=1248
Score = 98.7 bits (108), Expect = 1e-16
Identities = 129/177 (73%), Gaps = 4/177 (2%)
Strand=Plus/Minus
Query 14526 AATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTA--TCACTTCAGAAG 14583
|| || ||||| ||||||||||||||||| ||||| | |||||||| ||| || ||||
Sbjct 835 AAAGGTACAGTTAAATGGTTTAACGCAGAAAAAGGCTATGGCTTTATTTCAGTT--GAAG 778
Query 14584 AAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTG 14643
||| | || | |||| || ||||| ||||||||| || || || ||| || | |
Sbjct 777 GCGGCGAGGACGTATTCGTACATTTCTCCGCAATCCAAGGCGACGGCTTTAAAACATTGG 718
Query 14644 ATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700
| ||||||||| || ||||| || | || || | ||||||| ||||||||
Sbjct 717 AAGAAGGTCAAGCGGTAGAATTCGAAATCACTGATGGAAACCGTGGTCCTCAAGCAG 661
>seq1350
Length=2764
Score = 91.5 bits (100), Expect = 1e-14
Identities = 128/178 (72%), Gaps = 4/178 (2%)
Strand=Plus/Minus
Query 14525 AAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTTCAGAA 14582
||| ||||||||||||||||| ||||| |||||||| || || || ||| | || |||
Sbjct 2646 AAACGGAACAGTAAAATGGTTCAACGCTGATAAAGGCTTCGGTTTCATCGAAGTT--GAA 2589
Query 14583 GAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTT 14642
| || ||||| | |||| |||||| || || | || || |||||| | ||
Sbjct 2588 GGCGGAGAAGATGTATTCGTACACTTCAGCGCTATTACAGGCGAAGGCTTCAAAACGCTG 2529
Query 14643 GATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700
|| ||||||||| || ||||| | ||| | |||| | ||||||| ||||||||
Sbjct 2528 GACGAAGGTCAACGCGTGCAATTTAAAATTGTACAAGGAAACCGTGGTCCTCAAGCAG 2471
>seq3422
Length=1262
Score = 80.6 bits (88), Expect = 3e-11
Identities = 118/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGA 14593
|||||||||||| |||||||| ||||| | || || || | ||||| ||| ||
Sbjct 213 AGTAAAATGGTTCAACGCAGAAAAAGGTTACGGTTTCATTGAAACTGAAGACGGCGGCGA 154
Query 14594 TTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGTCA 14653
| |||| || ||||| ||||| ||||| || ||||||||| | | || ||||||||
Sbjct 153 CGTATTCGTACATTTCTCCGCAATTCAATCCGAAGGATTCAAAACTTTGGAAGAAGGTCA 94
Query 14654 AAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAG 14700
| || ||||| || | | ||||| ||||| | |||||||
Sbjct 93 ATCCGTAGAATTCGACATCGTCGAAGGCGCGCGTGGACCGCAAGCAG 47
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 48450714649188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |