Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07-
28] 6,578 sequences; 35,996,854 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq310 109 5e-19
seq1041 93.3 4e-14
>seq310
Length=625919
Score = 109 bits (120), Expect = 5e-19
Identities = 383/583 (66%), Gaps = 19/583 (3%)
Strand=Plus/Minus
Query 153732 TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCT 153791
|||||||| |||||||| ||||||||||| || ||| | ||||||||||| ||||
Sbjct 235005 TGATTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTC 234946
Query 153792 TGAATTTCTATAATAG--TACGCATCAATG-TGACCGCGGGCATTTGATCGCGAAACTGG 153848
|| || | ||||| ||| ||| | ||| | || | | || || || |
Sbjct 234945 TGCGCCTCGAGAATAGCATAC-CATATTTTCTGAGCACGAACCGTC--TCACGGCCCTTG 234889
Query 153849 CCCTTGTCT-TCGTAGTGTTTGTACCAGTATTCAAACTCATCACC--AAACGTATTGTTA 153905
|| || ||| || || | | |||| | | ||||| ||||| |||| ||
Sbjct 234888 CC-TTCTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAAC--ATCCGAC 234832
Query 153906 AGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGC 153965
|| | || ||||||||||| |||||||| | ||| ||| || | || || || ||
Sbjct 234831 AGACCAGGGCATTCGTTGGGGCACATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGC 234772
Query 153966 ATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTG 154025
||||| | |||||||| ||| || |||| | || |||||||| ||||| |
Sbjct 234771 ATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTT 234712
Query 154026 CCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAA 154085
||| ||| || | || | || | ||| | ||| ||||||||| || | |||
Sbjct 234711 CCATGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAG 234652
Query 154086 ACTGCTTGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGACGCACCATATTGTTG 154142
| || ||| ||| |||| ||||| ||||| | |||| ||| | | |||||
Sbjct 234651 ATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTA 234592
Query 154143 AAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCT 154201
| || || ||||| |||| |||||| ||| || |||||||| ||| | ||
Sbjct 234591 TAGACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAG 234532
Query 154202 GTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCAT 154261
|| |||| | | | ||| || | | ||||||||||| ||| |||||||||||
Sbjct 234531 CCTGTGGCC-CTGATGTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCAT 234473
Query 154262 GGCGCA-ATCGTTCAATGTGTTATAGATACCACGAATGCTATC 154303
||| || ||| || | || | ||||||||| |||||| ||
Sbjct 234472 GGCACATATC-TTGAGGGTATCGTAGATACCATCAATGCTGTC 234431
>seq1041
Length=763809
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||||| || ||||| | || ||||| || || ||||| |||||
Sbjct 709432 TGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCC 709373
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| ||| | ||| || ||||| || || || |||| ||||| ||||| || ||
Sbjct 709372 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGT 709313
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| ||||| || ||||| ||| ||| || | | || | ||||||| | |||
Sbjct 709312 GGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCC 709253
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || | || | ||||||||||| | || || ||||| |||||||||
Sbjct 709252 ACTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCATA 709202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496023211137600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |