Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1118 102 2e-16 seq4698 98.7 2e-15 >seq1118 Length=940645 Score = 102 bits (112), Expect = 2e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||||| || |||||||| || |||||||| || |||| |||||| Sbjct 123611 TCTCGTATTGCCGTCATTGGGCCAAATGGTGCCGGCAAGTCTACTCTCGTCAACGTCCTG 123670 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | || || |||| || ||| | |||| ||||| || || || Sbjct 123671 ACTGGTGAG-CTCATCCCGACTGCCGGCGACGTCTACCAGCACGAGAACATCCGTATCGC 123729 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| |||| || || | ||| || | | Sbjct 123730 CTACATCAAGCAGCACGCTTTCGCGCACATCGACCACCATCTCGAGAAGACCCCGTCCGA 123789 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 |||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 123790 ATACATCCAGTGGCGGT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 123840 Score = 96.9 bits (106), Expect = 7e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||||||| | ||| | ||||||| ||||| |||||||| || | Sbjct 124167 CCAACTTCGGTCTGGACGCTGAGCTCGTGTCTCACTCCCGCATGAAGGGTCTTTCCGGCG 124226 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | || ||| ||| |||| |||||| | |||||| |||||||| Sbjct 124227 GTCAGCGTGTCAAGGTCGTGCTCGCCGCATGCTC-GTGGCAGCGTCCTCACTTGATCGTT 124285 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 || |||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 124286 CTTGACGAGCCAACCAACTATCTCGACCGTGACTCACTGGGTGCTCT 124332 Score = 87.8 bits (96), Expect = 4e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC- 279761 ||||||| |||||||||||||||||||| || ||| |||||||| || | | ||| Sbjct 123156 CTCTGTCCGGTGGTTGGAAGATGAAGCTTGCGCTCGCTCGCGCCGTT-TTCGAAAAGCCA 123214 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || |||| ||||| || ||||| || || ||| ||||| || |||||| ||||| Sbjct 123215 GACATCCTTCTGCTCGACGAGCCGACGAATCACTTGGACGTCAAGAACGTAAAGTGGCTC 123274 Query 279822 GTGTCCTACCTAACCAG 279838 | | |||||| ||||| Sbjct 123275 GAGGACTACCTCACCAG 123291 >seq4698 Length=311777 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||||||||||| || ||||| || | ||||| ||| ||||||||||| | Sbjct 100479 TCATTGGGCCCAATGGTGCTGGCAAGTCGACGTTGATCAAGGTCTTGACTGGCGAGGTCA 100538 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 || || || || ||| ||||||||| |||| || | ||| || |||| Sbjct 100539 TTCCCCAAGAAGGCAAGGTCGAGAAACATCCCAACTTGCGAATTGGCTACATCAAGCAGC 100598 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||| || | ||| | |||| || || || | ||| || ||||| ||| ||||||||| Sbjct 100599 ACGCGCTCGAGCACGTGGAGATGCATCTCGAAAAGACGCCCAACCAGTACCTTCAGTGGC 100658 Query 280354 GCTATGC 280360 | ||||| Sbjct 100659 GATATGC 100665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027750173272098