Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5553 288 2e-72 seq310 194 3e-44 seq718 87.8 3e-12 >seq5553 Length=468990 Score = 288 bits (318), Expect = 2e-72 Identities = 579/848 (68%), Gaps = 22/848 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGA- 42367 |||||||| ||||| || ||| |||||| || ||||||||||| ||| | ||||| Sbjct 198268 ATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTGTCGAAGGAT 198327 Query 42368 ---CACGGCCGGCT---GGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACAT 42421 |||| | || | || ||| | | |||||| || ||| || | || | Sbjct 198328 CTCCACGACTGGAACAAGCGACTCAACGACGACGAACGA----TTCTTCATCTCACACGT 198383 Query 42422 ACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCAT 42481 || || ||||||||||| || || ||||| ||||| |||||||| | | | |||| Sbjct 198384 CCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCGCTTCAG 198443 Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||||||| | ||||| || |||||||||||||||||||| || ||||| Sbjct 198444 CTCTGAGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAA 198503 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | ||||| ||| || || || || | || |||||| || || |||| Sbjct 198504 CATCCACTCCGAGACATATTCCCTTCTCATCGATACATACATCAGCGAGCCAAAGCAGCG 198563 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | |||||||| ||||| || | || || |||||| | |||||| |||||||| Sbjct 198564 AACATACCTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGGCTGACTGGGC 198623 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | | ||||| | | || | | || |||| | | || | || ||| ||| Sbjct 198624 GTTGCGATGGATTTCT-GACAAGAACTCGACATTCGCCCTCCGTCTCATTGCATTTGCCG 198682 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-G 42779 |||| ||||| ||||||||||| || | || || | ||||||||||| ||| | | Sbjct 198683 CCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGAAGAAACGTG 198742 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || ||| |||| ||||| ||||||||||| |||||| | | || ||||| |||| Sbjct 198743 GTCTC-ATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAGGGCATGCAC 198801 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | ||||| |||||||| ||||||||| || || | | ||||||| ||| | Sbjct 198802 ACAGACTTCGCCTGCCTTCTGTTCTCG---CATCTGAAGAACAAGCCGAACCAGGCCCTT 198858 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT- 42958 || | | ||||||||| |||||||| ||||||| |||||||| | | ||| |||| Sbjct 198859 GTGCAGAGCATCATCACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGA--CAGACGCTC 198916 Query 42959 GCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 || || || | || |||||| | |||||||| | ||||| | | ||||| Sbjct 198917 TTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATTCGTCG 198976 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 |||| | || |||| | || || |||||||| | | |||||||| Sbjct 198977 CCGATCGCCTACTGTTAGCACTCGGCAACAAGAAGTTCTACAACGCCACCAACCCCTTCG 199036 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 |||| ||||||||||| ||| ||| |||||||||||||| ||||||||||| || | || Sbjct 199037 ACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCG 199096 Query 43138 ACTACCAG 43145 | |||||| Sbjct 199097 AGTACCAG 199104 >seq310 Length=625919 Score = 194 bits (214), Expect = 3e-44 Identities = 480/722 (66%), Gaps = 21/722 (3%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||| |||||||| || ||||| || | | ||||| | ||||| ||||| | Sbjct 235095 GCCAGATTGCAGACAGCGACCTCATCTGGAGCAGAGTACTCCATGATCTCAGTGCACAAA 235036 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| || |||||||||||| || | || |||||| |||| |||| |||||||||| Sbjct 235035 TTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTGCTCTTGCGGTTGGCGGCGTCCTTG 234976 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || || ||||| || ||||||||| ||| || |||| | | ||| | | | Sbjct 234975 TACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATATTTTC 234916 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||| |||||| || ||||||| ||| ||| || || |||||| ||| | Sbjct 234915 TGAGCACGAACCGTCTCACGGCCCTTGCCTTCTCTCTCATAACGCTCGTACAGCTCCTTG 234856 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCC 244985 |||||| || | || || || || ||||| || | |||||||| ||| ||| Sbjct 234855 AACTCGTCACCGTAAACATCCGACAGACCAGGGCATTCGTTG--GGGCACATCAGAGTCC 234798 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||| | | ||| | |||||| ||||| ||||| |||||||| || | ||| | Sbjct 234797 AAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAGAACA 234738 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 || | | | || ||| ||| |||||| | || |||| || | | || Sbjct 234737 AATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGCATGA 234678 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| | ||||| ||||| | ||||| || | || || || ||||||||||| |||| Sbjct 234677 CGTCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCCACCCT 234618 Query 245166 GGTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 ||| || | | ||||| | |||| ||| || || | || || | ||||| Sbjct 234617 GGT----CAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTGGTACAAGACCGTTG 234562 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG 245281 || |||||| ||||| ||||| | ||| || |||||| |||| || ||||| Sbjct 234561 GATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTG----TGAACATG 234506 Query 245282 ----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || | ||||| |||| ||||||||| | ||| || |||||| ||| || || Sbjct 234505 AAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGTAGAT 234446 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT-TGG 245396 || || |||||||| ||||||| | || |||||||| | ||||| | || ||| Sbjct 234445 ACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTGG 234386 Query 245397 GG 245398 || Sbjct 234385 GG 234384 >seq718 Length=192584 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 242937 GAGCTGATGAGGTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTG 242996 |||| ||||| |||||||||||||| || ||||||||||||||||||| || || Sbjct 61507 GAGCATATGAGATTCCCGGACAGGACGACAGTGATCGGACAGATGATCAACAGCTATCT- 61449 Query 242997 CTCAACAAG-AGCG-ATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGAT 243054 ||| || | || | | || ||||||| | |||| || || |||||||| || |||| Sbjct 61448 -CCAAGGAGCATCGCAACAAGAAGATCACGCCATACATCTGCTTTTCTCGGCGAATCGAT 61390 Query 243055 GGGAAGCCGCC 243065 ||||||| ||| Sbjct 61389 GGGAAGCTGCC 61379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944261551709280