Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5553 271 8e-68 seq1041 129 6e-25 seq1051 109 5e-19 seq5876 84.2 2e-11 >seq5553 Length=468990 Score = 271 bits (300), Expect = 8e-68 Identities = 581/859 (68%), Gaps = 17/859 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || ||||| || || || || || || | Sbjct 199119 CATGACACCAGCCTTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 199060 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCC 132707 || |||||| | ||| || || |||||||||| | ||||||| | |||| |||| Sbjct 199059 CAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 199000 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || | | | || || | ||||| ||||| || |||||||| |||||| | Sbjct 198999 GA---GTGCTAACAGTAGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGC 198943 Query 132768 ATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | ||||| || ||| || || || || || | || |||||||| | || Sbjct 198942 GTTCATCCCCAGAAGCTTGCAT-GGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGA 198884 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || ||||||| ||| | || | ||| | ||||| | | || |||| || Sbjct 198883 CGGCCTCGGTGATGATGCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGA 198824 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| | ||| || ||||| |||| |||||| || | ||| ||||| ||||| || Sbjct 198823 ACAGAAGGCAGGCGAAGTCTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGA 198764 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | |||| |||||| || ||||| || ||||| || || || || ||| || | Sbjct 198763 ATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGATCCAG 198704 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| ||||| || || || | || || | |||| || | | | Sbjct 198703 AGAAGAAGATACCCTCAACGGCGGCAAATGCAATGAGACGGAGGGCGAATGTCGAGTTCT 198644 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 || | ||||| |||| |||||| || ||||| || ||| || || | |||| Sbjct 198643 TGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGGATGTTGTCGA 198584 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGT 133184 |||| || |||| | | ||| || | || ||| | ||| || |||||||| Sbjct 198583 TGGCATTGAACAG--GTATGTTCGCTGCTTTGGCTCGCTGATGTATGTATCGATGAGAAG 198526 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244 ||||| | || ||||| | ||||||||| ||| || |||||||| ||||| || || Sbjct 198525 GGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGC 198466 Query 133245 CTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||| | |||||| || |||| ||| |||||||| || || |||||||| ||||| | Sbjct 198465 CTCCGGGATCTGCACCTCA-GAGCTGAAGCGCTCGACGAGGTTCTCGTTGACAATGCCAT 198407 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 || |||||||| || || || ||||| |||||| || |||| |||||| | | Sbjct 198406 CGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTC 198347 Query 133364 GCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 ||| ||||||| | ||||| ||||| || | |||||| | ||||| || || | Sbjct 198346 GCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGG 198287 Query 133421 CCTCGGCTTTTTTGTACAT 133439 ||||||| ||||||||||| Sbjct 198286 CCTCGGCCTTTTTGTACAT 198268 >seq1041 Length=763809 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| ||| | Sbjct 708975 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 709034 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || || | ||||| Sbjct 709035 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 709094 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || ||||| ||||| || || | || || || ||||||||| Sbjct 709095 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCGGACTACAAC 709154 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| |||| || || |||||||| ||| Sbjct 709155 ATCCAGAAAGAATCGACTCTCCACTTGGTGCTTCGT 709190 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| |||| || || | || Sbjct 709203 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACCATCACACTCGAAGTGGAATCATCC 709262 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || ||| |||| ||||| ||||| || || | ||||| Sbjct 709263 GACACGATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCA 709321 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| || || || || ||||| Sbjct 709322 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAA 709381 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| | || ||||| |||||||||||| | | || |||| Sbjct 709382 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGTCTCCGTGGAGGCC 709431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||| ||| |||| || ||| | |||||| | | | || | | || Sbjct 708769 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATG--TGAA 708826 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| || || || || ||||| | ||||| || || | |||| ||| || Sbjct 708827 GAGCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTCGCAGG 708886 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGC 38442 ||| ||||| || |||| |||||||| |||||||||||| || ||||| ||| || | Sbjct 708887 CAAGCAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGAGC-ACTC 708945 Query 38443 TGCATTTGGTGCTGCGT 38459 | ||| | || || ||| Sbjct 708946 TCCATCTCGTCCTCCGT 708962 >seq1051 Length=501590 Score = 109 bits (120), Expect = 5e-19 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 |||||||| | ||||| ||||| |||||||| |||| |||||| | | ||||| | | Sbjct 97219 TTCGTAAAGGCCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATC 97160 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| |||||||| || | ||||| ||||| Sbjct 97159 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTT 97102 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || ||| |||| || | ||||||||| ||||||||||||||| | Sbjct 97101 TGATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGA 97042 Query 38431 AGG 38433 ||| Sbjct 97041 AGG 97039 >seq5876 Length=784347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||||||||| | ||||| ||||| | || | ||| ||||| ||||| || Sbjct 203302 GACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 203361 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 || | ||||||||| |||||||||||| || ||||| ||| || || || | || || Sbjct 203362 GATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGAGC-ACCCTCCACCTCGTCCT 203420 Query 38456 GCGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 203421 CCGTCTGCGTGGTGG 203435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500131673291520