Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07-
28] 6,578 sequences; 35,996,854 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq5553 176 8e-39
seq310 156 8e-33
>seq5553
Length=468990
Score = 176 bits (194), Expect = 8e-39
Identities = 560/862 (65%), Gaps = 34/862 (4%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|||||| | |||||||| ||||| | |||| |||||| || || ||||||||||||
Sbjct 198259 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 198318
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGA-GCAGCATT-TTC-TCAAG 25593
| ||||| | ||| |||| || | | ||| ||||| | | ||| ||| ||
Sbjct 198319 TCGAAGGATCTCCACGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTCA 198378
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | |||||||| || || || ||||| || || |||||||| || |||| |
Sbjct 198379 CACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCGC 198438
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| | || |||||| | |||||| || |||||||| |||||||| ||
Sbjct 198439 TTCAGCTCTGAGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATG 198498
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTA--CAGACG 25768
|| || | ||||| ||| ||| || ||||| || || ||||| | || |
Sbjct 198499 GAGAACATCCACTCCGAGACATATTCC---CTTCTCATCGATACATACATCAGCGAGCCA 198555
Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828
|| | || | || ||||| ||||||||| |||| || ||||| |||||||
Sbjct 198556 AAGCAGCGA-ACAT-ACCTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGG 198613
Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888
| ||||| || ||||| | ||| | | || || | | || || | |
Sbjct 198614 CTGACTGGGCGTTGCGATGGATTTCTGACAAGAACTCGACATTCGCCCTCCGTCTCATTG 198673
Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948
| ||||| || || ||||| ||||| ||| || || ||||| || ||||||||||| |
Sbjct 198674 CATTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 198733
Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007
|| | | | || | |||| ||||||| || || |||||||||||| | | || |||
Sbjct 198734 AG-AAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAG 198792
Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067
|| | |||| ||| || |||||||| || | | || || || |||| ||
Sbjct 198793 GGCATGCACACAGACTTCGCCTGCCTTCTGTTCTCG---CATCTGAAGAACAAGCCGAAC 198849
Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127
|| | || | || ||||||| ||||| || ||||||| |||||||
Sbjct 198850 CAGGCCCTTGTGCAGAGCATCATCACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGACA 198909
Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187
|||| |||||| | |||||| |||||||||||
Sbjct 198910 GACGCTCTTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAA 198969
Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGTACG 26241
| || ||||| | || |||| | | ||||| | ||| |||||| |||
Sbjct 198970 TTCGTCGCCGATCGCCTACTGT------TAGCACTCGGCAACAAGAAGTTCTACA--ACG 199021
Query 26242 C--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299
| | ||||| |||||||| ||||| ||||| ||| ||| || |||||||||||||| |
Sbjct 199022 CCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCG 199081
Query 26300 AAAAGAGGGTCGGCGACTATCA 26321
| ||| | || ||||| || ||
Sbjct 199082 AGAAGCGTGTTGGCGAGTACCA 199103
>seq310
Length=625919
Score = 156 bits (172), Expect = 8e-33
Identities = 430/649 (66%), Gaps = 25/649 (4%)
Strand=Plus/Minus
Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTA 221809
|||| |||||||| || || | || || ||||||||| || || | || |||||
Sbjct 235059 TACTCCATGATCTCAGTGCACAAATTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTG 235000
Query 221810 GACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869
|||||| ||||| ||||||||||| || || || || ||| ||||| ||| |||
Sbjct 234999 CTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCC 234940
Query 221870 ACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGT 221928
| ||||| | ||| | || |||| || | |||||| | || || | | |
Sbjct 234939 TCGAGAATAGCATACCATATTT-TCTGAGCACGAACCGTC----TCACGGCCCTTGCCTT 234885
Query 221929 CTTT-TCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987
|| | ||||| | || ||| | |||| |||||||| | || ||| || |
Sbjct 234884 CTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAACATCCGACAGACCAG 234825
Query 221988 GACACCTGGCGGGACACATCAGACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAG 222046
| || | ||| ||||||||| |||| |||| ||| | || ||| | |||||| |||
Sbjct 234824 GGCATTCGTTGGGGCACATCAGAGTCCAAGTGCC-GTTCTGTTCGACACGCTGCATAAAG 234766
Query 222047 AGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTG 222106
|| || || ||||| || || | || | ||| | | || || ||| || | |
Sbjct 234765 AGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTTCCATGG 234706
Query 222107 TTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCC 222166
|| || | || |||| |||| | | ||| || ||||||||||| || |||| |||
Sbjct 234705 TTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAGATGGCA 234646
Query 222167 AGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTG---AA 222222
| ||| || || ||||||||||||||||| | || | | | || || |||| |
Sbjct 234645 AAAGCACCTGGACGCTTGTTGCCACCCTGGT----CAACGTAACGAGCAGTGTTGTTATA 234590
Query 222223 GATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACC 222282
|| || || | ||||| || ||||||||| ||||| ||||| |||||| | ||
Sbjct 234589 GACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAGCC 234530
Query 222283 GCCGGCCCTCAGGTT----ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCA 222338
|||||| | ||| || | ||| || ||||| || |||| || |||||||
Sbjct 234529 TGTGGCCCTGATGTTGTGAACATGAAGA----CCAATACCGCCAGCGTTCTTGGAGATCA 234474
Query 222339 TGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT 222387
|||| || ||||||| || || ||| || || || ||| |||||
Sbjct 234473 TGGCACATATCTTGAGGGTATCGTAGATACCATCAATGCTGTCATCCTT 234425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928768425736320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |