Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq310 140 5e-28 seq5553 134 2e-26 >seq310 Length=625919 Score = 140 bits (154), Expect = 5e-28 Identities = 462/715 (65%), Gaps = 10/715 (1%) Strand=Plus/Minus Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 || || || || ||||||| || |||||| ||||| || || ||||||| | ||| Sbjct 234855 AACTCGTCACCGTAAACATCCGACAGACCAGGGCATTCGTTGGGGCACATCAGAGTCCAA 234796 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 || | | | || || | |||||||||||| || ||||| ||||| || | | Sbjct 234795 GTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAA 234736 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 || || | | | |||||| ||||| ||||| ||| || | ||||| ||| | Sbjct 234735 TCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGCATGACG 234676 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762 || | |||||| || || || || || || | | |||| || || || || || ||||| Sbjct 234675 TCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGG 234616 Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822 || | || | |||||||| ||||| |||| | |||||| | || ||||| ||||| Sbjct 234615 TCAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTGGTACAAGACCGTTGGATGTG 234556 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 || ||||| || ||| || || || | || || || | || || || Sbjct 234555 CCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTGTGAACATGAAGACCAATA 234496 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || | || ||||| | ||||| || | || || ||||| || || || Sbjct 234495 CCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGTAGATACCATCAATG 234436 Query 76943 CTATCATCCATCATG----TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || |||||| ||||| |||||| | ||||| || || || || Sbjct 234435 CTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG----CTGCGCCTGTGGGGTACC 234380 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATG 77057 ||| | || | ||| || || ||||| ||||| | || || | |||| ||||||| Sbjct 234379 AGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAG-TTGTATG 234321 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | ||||| ||||||| || || |||||| || ||||| |||||||| | ||| | Sbjct 234320 TCTCAATCGCTGCTTCAATGTCTTCCCCATGAATGCCGACAGCCACACGCATGATCATCT 234261 Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177 | || |||| || || ||| | ||| | | | ||||||| |||| ||| | Sbjct 234260 GTTGCGGTCTCTCGGCAACCTTGCCGTCAATTCTGAGAAGGTATGATCGCTCCAGAGTCT 234201 Query 77178 TAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAG 77232 | || || || || | ||| ||||| | || || | ||| |||| || || Sbjct 234200 TGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCATAGACAATGGCCGAGTTCAG 234146 >seq5553 Length=468990 Score = 134 bits (148), Expect = 2e-26 Identities = 546/851 (64%), Gaps = 12/851 (1%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || || ||||| |||||||| || || || ||||| ||| || || || Sbjct 199106 TTCTGGTACTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGCGAAATGTTC 199047 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| || || || || || || | || || | || || || | | || | | Sbjct 199046 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCTAACAGT 198987 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || |||||||| || || | ||| | || ||||| || | || Sbjct 198986 AGGCGATCGGCGACGAATTCAATGTATTGTGACATGAGGCCAGCGTTCATCCCCAGAAGC 198927 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||| || ||||| || || | ||||| || || || ||||| || || | || || Sbjct 198926 TTGCATGGAAGAGCGTCTGTCAAGAACTCCTGCTCGATCGTGACGGCCTCGGTGATGAT- 198868 Query 46579 GATGTT-ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | | || ||| | || | | ||| ||| |||| | || || || Sbjct 198867 GCTCTGCACAAGGGCCTGGTTCGGCTTGTTCTTCAGATGCGAGAACAGAAGGCAGGCGAA 198808 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 || || | ||| ||||| | || | ||||| || ||||||||||| | ||| Sbjct 198807 GTCTGTGTGCATGCCCTCATCACGGGAGATGAGCTCGTTCGAGAATGTGAGCCCGGCCAT 198748 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| || || ||||| || ||||| || ||||||||||| ||||| || || || Sbjct 198747 GAGACCACGTTTCTTCAGCCAGAAGATAGCAGCAAAAGATCCAGAGAAGAAGATACCCTC 198688 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCT 46814 || || || ||||| | || | || | | | | || | | ||||| | Sbjct 198687 AACGGCGGCAAATGCAATGAGACGGAGGGCGAATGTCGAGTTCTTGTCAGAAATCCATCG 198628 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||||| |||||||| | | || || || | || || ||||| || || | Sbjct 198627 CAACGCCCAGTCAGCCTTCCTGCGGATGCATGGGATGTTGTCGATGGCATTGAACAGGTA 198568 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 || | | || | | |||||||| || | ||| ||| | || || || Sbjct 198567 TGTTCGCTGCTTTGGCTCGCTGATGTATGTATCGATGAGAAGGGAATATGTCTCGGAGTG 198508 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 ||||| || || ||||| || ||||| || |||| ||| || | ||||| ||||| Sbjct 198507 GATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGGGATCTGCACCTC 198448 Query 46995 TGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 | | || || || ||| | ||||| || || || ||||| || || || |||| Sbjct 198447 AGAGCTGAAGCGCTC-GACGAGGTTCTCGTTGACAATGCCATCGGATGCGGCGAAGAATG 198389 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCG--GT--AGTCAGTTTATTCCAGTCATTG 47109 | | || ||| || || || ||| ||| || |||| | || |||||||| | | Sbjct 198388 CGAGGACGTGTGAGATGAAGAATCGTTCGTCGTCGTTGAGTC-GCTTGTTCCAGTCGTGG 198330 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 | ||| || || | ||| | || ||||||||||||||||| ||||| || ||||| ||| Sbjct 198329 AGATCCTTCGACAGATCAATCTCCTCAGCTGTCCAGAATGAGGCCTCGGCCTTTTTGTAC 198270 Query 47170 ATATTCCATAT 47180 || | |||||| Sbjct 198269 ATTTGCCATAT 198259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712875778968960