Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq5663 163 5e-35 seq4879 154 2e-32 >seq5663 Length=1811 Score = 163 bits (180), Expect = 5e-35 Identities = 337/497 (68%), Gaps = 6/497 (1%) Strand=Plus/Minus Query 144814 TTTGATAAAGTTACAGAATATCCAGTTCGCATGCAAACAGTAAATAATAAAGACATCAAA 144873 ||||||||||| || ||||||| |||| || ||||| || | | || || || | Sbjct 1800 TTTGATAAAGTAACGAAATATCCGATTCGAATTCAAACGGTTGAATACAAGGATATTCAG 1741 Query 144874 GTAGCAACATCTGATGGTAAAAACATTGAAATGGATATTGCTTATAACTATGTTGTACAA 144933 | || || |||||||| || ||||| ||| ||| ||||||||||||| ||| || Sbjct 1740 ATTGCGACTTCTGATGGGAAGAACATCACAATTGATTTTGCTTATAACTACCAAGTAGAA 1681 Query 144934 CCAGATAAAGTAGTAGATGTATTTAATAAGTTTGGTTCAGTTAAAGTTGAACAAATTGAG 144993 ||| ||||||| | |||| |||| ||||| || ||| || || |||||||| Sbjct 1680 CCAAGTAAAGTATCTTCTATATTCAATACATTTGGGCCAATTAGCATTCAAGAAATTGAG 1621 Query 144994 AATTCATATCTTAAATCACGTTTATGGGATGCCTCTCGTAAAGTGATCTCTAAATATTCA 145053 || ||||||| ||| ||||||| | || | ||||||||| ||||| || | | || Sbjct 1620 GATACATATCTCAAAACACGTTTCCGTGACTCAGCTCGTAAAGGTATCTCCAAGTTTACA 1561 Query 145054 GTAATTGATACTTATGGTCAAAAATCTTCAGAAGCGGCTAGTGAAATTCAAAAAAC-ATT 145112 || |||||| |||||| |||| || || ||||| | |||| | || || ||| || Sbjct 1560 GTCATTGATGTATATGGTGAAAAGTCATCCGAAGCAG-GAGTGGATGTCCAACAACGTTT 1502 Query 145113 TGCTGAAGATATGAAGAAATATGGTTTTATTATTGATGATCTTACTTTAGGTGTGCCAAA 145172 | |||| || | || | | || |||||| | | |||| ||||||| || | Sbjct 1501 TTCTGATGACGTTAAAGAGTTAGGCTTTATTGTATCCAACGTTACCGTAGGTGTTCCTCA 1442 Query 145173 GCCAGAT--AAAGCTACTCAAGATGCAATTGATGCTAGAGTTAAATCTTCTCAGGAATTA 145230 || ||| ||| ||||| || ||||| ||| | ||| || | ||||| ||| | Sbjct 1441 ACCTGATGCTAAG--ACTCAGGAAGCAATCGATAAGCGTGTTGAAGCCTCTCAAGAACTG 1384 Query 145231 GAACGTTCTCAAACTGAAATCAAGATTGCTAAAGCAGATGCTGAGAGGAAGAAAATTGAA 145290 |||||| |||||| | |||| || || ||| || || | ||| | ||| Sbjct 1383 GAACGTAAAACGACTGAACTTGAGATCGCCAAGAAAGAAGCAGAACGTAAGCGCGTGGAA 1324 Query 145291 GCTCAAGGTGTTGCAGA 145307 || |||||| |||||| Sbjct 1323 GCGCAAGGTAATGCAGA 1307 >seq4879 Length=2170 Score = 154 bits (170), Expect = 2e-32 Identities = 873/1376 (63%), Gaps = 43/1376 (3%) Strand=Plus/Minus Query 190894 ATCACTATTGACAAATAAAGTAGTAGAAATACCCTGATCAATATGTTGTTGGATTACTGC 190953 |||||| || ||| | | | || || || || || || | ||| | || || | || Sbjct 1492 ATCACTGTTTACATGAAGAATTGTGGAGATTCCTTGGTCCACATGCGGCTGAATCTCCGC 1433 Query 190954 AACCATGTCAATAATTTTATTTTGATCCATATCATATGCTGATTTGTAAGACCATTGAGT 191013 || || ||||| | || ||||||||| | ||| |||||||||||| | | | | Sbjct 1432 AATCAAATCAATTACCTTGAATTGATCCATCTGATACGCTGATTTGTAATAGAAGACA-T 1374 Query 191014 TCTACCGTC-TAGATATGGCATTGGATAGTATGTTGTAGAGTCATGATATGTTCTGTTTT 191072 | | | | || ||| ||||| ||||| || || || || | ||| |||| | | Sbjct 1373 TATCCTTTTGTAAATAGGGCATCGGATAATACGTGGTTGAATTGGCATAGGTTCGTGTCT 1314 Query 191073 CAATTCGACTTACAACTGGCATAATAGATTGA-GTTGAATTCTGTACATAACTAATTGAC 191131 ||||| | ||||| ||||| | | | || |||| ||| || | |||| || | Sbjct 1313 CAATTTGTTCTACAATGGGCATTACAC-TGGATGTTGCATTTTGGATATAAGAGAT-GCT 1256 Query 191132 TG-TGTAGGTGCAATAGCAAGTCTATAAGCATGGTATAAACCATTTTCTTTTACTTG--- 191187 || ||| || |||||||| | | ||| ||||| || | |||||||| | |||| Sbjct 1255 TGCTGTTGGAGCAATAGCCATGCGATAGGCATGATAGAGGCCATTTTCCATCACTTTAAA 1196 Query 191188 -TTCTGCTAATTCAGCCCAATCTTCTTTTGTTGGAACAAAGATTCCCTCAAATAATTCTT 191246 || ||| ||| ||||| || | |||||| ||||| | ||| |||| || Sbjct 1195 TTTAAGCTGTTTC----CAATCATCGGGCGAAGGAACATCAATTCCGTTAAACAATTGTT 1140 Query 191247 TTACTTTTTGACTTCTAGGTGTATAATCATTTTCGATATAACGTTTAAAATAATTACCAT 191306 |||||| | | || ||||| | | |||||| | |||||| |||| Sbjct 1139 GTACTTTCGATGTGTTGGGACGGTAATCCGTGGTCACATAACGATCAAAATATACACCAG 1080 Query 191307 TAGCATATTCAGAATCTTCAAAACGATGGAAttttttatttttCTCAATAGCAATTTCCA 191366 | ||||| || || || ||||| | |||||| || | | || |||| |||| Sbjct 1079 TCGCATAGTCGGACTCCTCAAATCCATGGAACCGTTGGCCGGTTTGCATTGCAAACTCCA 1020 Query 191367 TACTTCGTCTA-ATACTATGGAAATTCATAATTGCAAAGAA--TACATTGGCAAAATCTC 191423 ||||| ||| | ||| ||||||| | |||||| ||| | ||||||| Sbjct 1019 TACTTT-TCTCCAGGGAATGATAATTCATGGTCATAAAGAAGGTACGTA--CAAAATCCT 963 Query 191424 TAGCTACAGCACTTTCATATGAAATACTATTTTTAGCAAGGAAACCATGTAAGTTCATTG 191483 | ||| | | || ||||| | ||| || || || |||| |||| || | ||||| | Sbjct 962 TGGCTTCCGAGCTCTCATAAGCAATCCTGTTCTTGGCAAAATAACCGTGCAGATTCATGG 903 Query 191484 CGCCTAAACCAACTGAATGGAATAGAGCATTTGCTTTTCTTATAGATGGTGCATTTTTGA 191543 | || |||||||| ||||| | | | || ||||| || | || ||||| | Sbjct 902 CACCCAAACCAACGGAATGCATTTCGGAGTTGGCTTTGGCTACACCAGGAGCATTGGCAA 843 Query 191544 TATCACTCTTATCTGTTACAGATGTTAAAATATCCATTGCAATATCTACAGAATCTTTAA 191603 || || | || | || ||||| | |||| | || || || || || | Sbjct 842 CATGCGTCATGTCGCTGACGGATGTCAGTGCGATCATTCCCTCATGAACGGATTCCTTGA 783 Query 191604 ATTTTTTAGTCTCCATTACATTAACGATATTTAATGATGCAAGGTTACAACTGATTCCCA 191663 || | ||||||| |||||||| ||||| | || || ||||| || || || | Sbjct 782 TCTTGCCACTCTCCATAACATTAACAATATTGAGGGAGGCCAGGTTGCAGCTAATATCTT 723 Query 191664 ATCC--TAATTCATCTTCTTCTCCATAATTATTAATTACTGA----TACTGAACTTAACT 191717 | |||| ||| || ||||| | ||||| | || | ||||| || Sbjct 722 TGCGGATAAT--ATCCGGTTGACCATAGTCTGTAATTTCAGAAGTCTCCTGAAGTT---- 669 Query 191718 GCATAATTTCAGTACAAAGGTTAGAGAATTTAATTTCACCAATTGCTTTTAAAGCATGTT 191777 | | || || || || ||||| || | ||| | || || | |||||| |||||| Sbjct 668 GGAAGATCTCTGTGCAGAGGTTGGACATTTTGACTTGTCCTACGTTTTTTAAGGCATGTG 609 Query 191778 CTTTATTAGCATTTGTTTTGAAGAACAGATAAGGGTATCCTGATTCTAATTGAGTCATTG 191837 ||| ||||||||| ||||| | | ||| || || || ||||| | |||| |||| | Sbjct 608 CTTGATTAGCATTGGTTTTATTAATGATATAGGGATAGCCGGATTCAAGTTGAATCATCG 549 Query 191838 CAATTTGATTCATTAGTTTCATTGGTGATAATTCAC-ATACAAATTTCTTAATATTTGGA 191896 | |||| ||| | | | || | || || || ||||| | | Sbjct 548 CTATTTTGGTCAGCATATCCCGTGC----ACTTAACGATTTTTTCTTCTTCACACGGTCG 493 Query 191897 TTATTAACTAATTCATCATACATTACATCTAAATCCATCTCATCTAAAGGAATTCCATAT 191956 | | | || ||||||||| ||||| | |||||| ||||| ||| | ||||||| Sbjct 492 TCAGCGAGCAACGTATCATACATCACATCCAGATCCATATCATCCAAATGTGTTCCATAC 433 Query 191957 TCTTTTTCGACACTATAAGGAGAGAATGTATAGAACTCTTC-TTCTCCTGATTCTAGCAA 192015 | || | |||||||||||| | ||| ||| || || || || ||| | ||| Sbjct 432 GCCTTATAGACACTATAAGGTGCGAAGAGATACAAGGGCTCATTATCTTGAGCC-AGC-- 376 Query 192016 TTGAATAAATTTATCAGGAACAATAATTCCAGTTGAAAGTGTTTTCATACGAATGCTATC 192075 | | ||| || |||||| |||| ||| | || || ||||||| ||| || | || Sbjct 375 -TTATAAAAACGATTAGGAACGATAAGTCCGATAGAGAGAGTTTTCAGACGGATTTTCTC 317 Query 192076 GTCAGCATTGAtttttttAGTATTTAGGAAATGAATAATATCCCCATGAAAAATATTAAG 192135 ||| |||||||| |||||| | | || | | |||| |||| | ||||||||| Sbjct 316 GTCCGCATTGATCTTTTTACTGTCCAGCAGTTCCATAACGTCCCAACCGAAAATATTATA 257 Query 192136 ATAAACAGCTCCTGAGCCTTTGCGTTGACCCATCTGATCAGCATAAGAGAAACTTTGTTC 192195 || | || || || || || ||||||||||||||||| || |||||||||| | || Sbjct 256 GTATGCTGCGCCAGAACCCTTCCGTTGACCCATCTGATCGGCGTAAGAGAAACCATCCTC 197 Query 192196 CAATAATTTCATTACAGGAATAACACCTTTAGCGGCATTTTCTTCACCATTTACTG 192251 || | || | ||||| ||| ||||| || || ||| |||| |||| || Sbjct 196 CATCAGCTTGAGAACAGGCGTAATGCCTTTCGCAGCCCCTTCGACACC-TTTAATG 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 803140356353760