Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236675.1_202017-07- 28] 6,578 sequences; 35,996,854 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1041 163 7e-35 seq1051 118 3e-21 >seq1041 Length=763809 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||||| ||||| |||||| || ||| Sbjct 709206 CAAATTTTCGTCAAGACACTCACCGGCAAGACCATCACACTCGAAGTGGAATCATCCGAC 709265 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||| || ||||| || || ||||| ||||||||||| Sbjct 709266 ACGATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAGCAG 709325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || |||| ||| | ||||| ||| || Sbjct 709326 CGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAACATC 709385 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 709386 CAGAAGGAGTCCACTCTGCA-CTTG 709409 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||||||||||| || | ||| Sbjct 708978 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGAC 709037 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 709038 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAG 709097 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || |||||||| ||||| | ||||| | || || ||| || Sbjct 709098 CGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCGGACTACAACATC 709157 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| || || || |||| Sbjct 709158 CAGAAAGAATCGACTCTCCA-CTTG 709181 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || || ||||||||||| || || ||||||||||| || || || Sbjct 708769 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTGAAGA 708828 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| ||||| || ||||| || || || ||||||||||| | || ||||| || | Sbjct 708829 GCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTCGCAGGCA 708888 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| || || | || || |||| || ||| | || || || || || | Sbjct 708889 AGCAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGAGCACTCTCC 708948 Query 178123 ATCTTGT 178129 |||| || Sbjct 708949 ATCTCGT 708955 >seq1051 Length=501590 Score = 118 bits (130), Expect = 3e-21 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACC 177986 ||||| || | ||||| || || || ||||| |||||||| || ||| |||||| Sbjct 97219 TTCGTAAAGGCCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGC---GACACC 97163 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || ||||| ||||| |||||||| || |||||||| ||||||||||| || Sbjct 97162 ATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGT 97103 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | |||||||| ||||| ||| | || ||||| | || || |||| || ||| |||| Sbjct 97102 TTGATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTCTCCGACTACAACATCCAG 97043 Query 178107 AA 178108 || Sbjct 97042 AA 97041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203629748782132