Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236685.1_202017-07-
28] 143 sequences; 29,909,557 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq112 140 2e-28
seq83 129 4e-25
>seq112
Length=1479261
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 402445 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 402504
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 402505 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 402539
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 410983 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 411042
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 411043 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 411077
>seq83
Length=160104
Score = 129 bits (142), Expect = 4e-25
Identities = 199/284 (70%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260
|||||||||||||| ||| ||||||| ||||||| ||||| ||||| ||||||||
Sbjct 58044 TTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGGTAGAGGGGAAGGGTAACGGTATC 58103
Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320
|| || ||| | ||||| || | | |||||| | ||||| ||||| | | |||
Sbjct 58104 AAGACTGTCGTCGTCAATCTGGCCAACGTCGCTTACCAGCTCGCCCGCCCGCCAAGCTAT 58163
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
| || || || || | ||| || ||||| ||||| | |||| | ||| ||||
Sbjct 58164 GTCATCAAGTACTTTGGTTTCGAGCTCGGCGCCCAGACCAATATTGACCCCAAGGACGAC 58223
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| ||| | ||||| | ||| | || ||||| |||| |||| || || |||||
Sbjct 58224 CGCTGGATCATCAACGGTGCACATGAGGCTACCAAGTTGCAAGACTACCTCGATGGCTTC 58283
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
|| |||||| || || || ||| ||| | ||||| |||||
Sbjct 58284 ATCAACAAGTTCGTCCTCTGCAAGGACTGCAAGAACCCCGAGAC 58327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946616249833
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |