Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236685.1_202017-07-
28] 143 sequences; 29,909,557 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq122 120 3e-22
>seq122
Length=1260175
Score = 120 bits (132), Expect = 3e-22
Identities = 156/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | ||||| || ||||||| |||| || |||||
Sbjct 552549 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 552490
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || || ||||||||||
Sbjct 552489 GACACCATCGA--CAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACC 552432
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | |||||||| ||||| || | || |||| ||| ||| || ||| ||||
Sbjct 552431 AGCAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCCGACTACA 552372
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || |||||||| || || || || |||||
Sbjct 552371 ACATCCAGAAAGAATCGACTCTCCACTTGGTGCT 552338
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
||||| || |||| || |||| || |||||||| ||||| ||||| |||||
Sbjct 552753 ACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTGAAGAGC 552694
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| || || ||||| |||||||||||||| || || | ||||| || |||||
Sbjct 552693 AAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTCGCAGGCAAG 552634
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
|| | || || | |||||| || ||| ||||| ||||| || || ||| || |||
Sbjct 552633 CAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGAGCACTCTCCAT 552574
Query 25203 TTAGTGCT 25210
| || ||
Sbjct 552573 CTCGTCCT 552566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327244790545
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |