Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236685.1_202017-07- 28] 143 sequences; 29,909,557 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11 291 2e-73 seq50 194 3e-44 seq55 87.8 3e-12 >seq11 Length=1109632 Score = 291 bits (322), Expect = 2e-73 Identities = 583/854 (68%), Gaps = 34/854 (4%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGA- 42367 |||||||| ||||| || ||| |||||| || ||||||||||| ||| | ||||| Sbjct 842269 ATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTGTCGAAGGAT 842328 Query 42368 ---CACGGCCGGCT---GGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACAT 42421 |||| | || | || ||| | | |||||| || ||| || | || | Sbjct 842329 CTCCACGACTGGAACAAGCGACTCAACGACGACGAACGA----TTCTTCATCTCACACGT 842384 Query 42422 ACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCAT 42481 || || ||||||||||| || || ||||| ||||| |||||||| | | | |||| Sbjct 842385 CCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCGCTTCAG 842444 Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||||||| | ||||| || |||||||||||||||||||| || ||||| Sbjct 842445 CTCTGAGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAA 842504 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | ||||| ||| || || || || | || |||||| || || |||| Sbjct 842505 CATCCACTCCGAGACATATTCCCTTCTCATCGATACATACATCAGCGAGCCAAAGCAGCG 842564 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | |||||||| ||||| || | || || |||||| | |||||| |||||||| Sbjct 842565 AACATACCTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGGCTGACTGGGC 842624 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | | ||||| | | || | | || |||| | | || | || ||| ||| Sbjct 842625 GTTGCGATGGATTTCT-GACAAGAACTCGACATTCGCCCTCCGTCTCATTGCATTTGCCG 842683 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-G 42779 |||| ||||| ||||||||||| || | || || | ||||||||||| ||| | | Sbjct 842684 CCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGAAGAAACGTG 842743 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || ||| |||| ||||| ||||||||||| |||||| | | || ||||| |||| Sbjct 842744 GTCTC-ATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAGGGCATGCAC 842802 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | ||||| |||||||| ||||||||| || || | | ||||||| ||| | Sbjct 842803 ACAGACTTCGCCTGCCTTCTGTTCTCG---CATCTGAAGAACAAGCCGAACCAGGCCCTT 842859 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 || | | ||||||||| |||||||| ||||||| |||||||| | || || |||| Sbjct 842860 GTGCAGAGCATCATCACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGAC--AGACGCTC 842917 Query 42960 C-CCGTGTCC-CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 || || || | || |||||| | |||||||| | ||||| | | ||||| Sbjct 842918 TTCCATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATTCGTCG 842977 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------TCTACAACACGCCGTGCC 43071 |||| | || |||| ||| ||| || | |||||||| | | || Sbjct 842978 CCGATCGCCTACTGT------TGGCACTCGGCAACAAGAAGTTCTACAACGCCACCAACC 843031 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 |||||||||| ||||||||||| ||| ||| |||||||||||||| ||||||||||| | Sbjct 843032 CCTTCGACTTCATGGAGAACATTTCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTG 843091 Query 43132 TCGCCGACTACCAG 43145 | | ||| |||||| Sbjct 843092 TTGGCGAGTACCAG 843105 >seq50 Length=820670 Score = 194 bits (214), Expect = 3e-44 Identities = 480/722 (66%), Gaps = 21/722 (3%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||| |||||||| || ||||| || | | ||||| | ||||| ||||| | Sbjct 774966 GCCAGATTGCAGACAGCGACCTCATCTGGAGCAGAGTACTCCATGATCTCAGTGCACAAA 774907 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| || |||||||||||| || | || |||||| |||| |||| |||||||||| Sbjct 774906 TTAGAGCTCTTGATGGTGCCAAGATTCTTCTGATTGCTCTTGCGGTTGGCGGCGTCCTTG 774847 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || || ||||| || ||||||||| ||| || |||| | | ||| | | | Sbjct 774846 TACAGAATGAAAGGTGTGCCGGTCTCGGTCTGCGCCTCGAGAATAGCATACCATATTTTC 774787 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||| |||||| || ||||||| ||| ||| || || |||||| ||| | Sbjct 774786 TGAGCACGAACCGTCTCACGGCCCTTGCCTTCTCTCTCATAACGCTCGTACAGCTCCTTG 774727 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCC 244985 |||||| || | || || || || ||||| || | |||||||| ||| ||| Sbjct 774726 AACTCGTCACCGTAAACATCCGACAGACCAGGGCATTCGTTG--GGGCACATCAGAGTCC 774669 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||| | | ||| | |||||| ||||| ||||| |||||||| || | ||| | Sbjct 774668 AAGTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAGAACA 774609 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 || | | | || ||| ||| |||||| | || |||| || | | || Sbjct 774608 AATCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGCATGA 774549 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| | ||||| ||||| | ||||| || | || || || ||||||||||| |||| Sbjct 774548 CGTCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCCACCCT 774489 Query 245166 GGTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 ||| || | | ||||| | |||| ||| || || | || || | ||||| Sbjct 774488 GGT----CAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTGGTACAAGACCGTTG 774433 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG 245281 || |||||| ||||| ||||| | ||| || |||||| |||| || ||||| Sbjct 774432 GATGTGCCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTG----TGAACATG 774377 Query 245282 ----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || | ||||| |||| ||||||||| | ||| || |||||| ||| || || Sbjct 774376 AAGACCAATACCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGTAGAT 774317 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT-TGG 245396 || || |||||||| ||||||| | || |||||||| | ||||| | || ||| Sbjct 774316 ACCATCAATGCTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAGCTGCGCCTGTGG 774257 Query 245397 GG 245398 || Sbjct 774256 GG 774255 >seq55 Length=612710 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 242937 GAGCTGATGAGGTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTG 242996 |||| ||||| |||||||||||||| || ||||||||||||||||||| || || Sbjct 552959 GAGCATATGAGATTCCCGGACAGGACGACAGTGATCGGACAGATGATCAACAGCTATCT- 553017 Query 242997 CTCAACAAG-AGCG-ATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGAT 243054 ||| || | || | | || ||||||| | |||| || || |||||||| || |||| Sbjct 553018 -CCAAGGAGCATCGCAACAAGAAGATCACGCCATACATCTGCTTTTCTCGGCGAATCGAT 553076 Query 243055 GGGAAGCCGCC 243065 ||||||| ||| Sbjct 553077 GGGAAGCTGCC 553087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337511993680