Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236685.1_202017-07- 28] 143 sequences; 29,909,557 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq11 145 2e-29 seq122 109 2e-18 seq64 98.7 3e-15 >seq11 Length=1109632 Score = 145 bits (160), Expect = 2e-29 Identities = 468/726 (64%), Gaps = 3/726 (0%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || ||||| || ||||| || || || || || | | | | | ||||||| Sbjct 294111 GCAATCGGTATCGACTTGGGTACCACGTACTCCTGCGTGGGTATCTTCAGAGATGATCGC 294052 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || ||||| || ||| | ||||| || |||| ||| || || || Sbjct 294051 ATCGAGATCATCGCCAACGATCAGGGCAACCGCACAACACCCTCATTCGTCGCCTTCACA 293992 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | || |||||| |||| || || || | || || ||| ||| Sbjct 293991 GACACCGAGCGTCTAATCGGTGATGCTGCCAAGAACCAGGTCGCCATGAACCCAGCAAAC 293932 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || || || |||||| | || || | | || ||| | ||| | Sbjct 293931 ACAGTCTTCGACGCAAAGCGATTGATCGGCCGCAAGTTCCAAGACGCAGAGGTGCAAGCA 293872 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || || ||||| || | || | || | ||| || ||| | || | Sbjct 293871 GATATGAAGCACTTTCCCTTCAAGGTCATCGAGAAGGCCGGC---AAGCCAGTCATCTCG 293815 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || || | || || || | || || || ||| || || || || | ||| || | Sbjct 293814 GTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACACCAGAGGAGATCTCCGCCATGATTCTC 293755 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | || || | || | |||| || || | | || || | Sbjct 293754 ACAAAGATGCGTGAGACCGCAGAGTCGTACCTTGGTGGCACCGTCAACAACGCCGTCGTC 293695 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || ||||| ||||| || || | ||||| ||||| || || || ||| |||| Sbjct 293694 ACGGTTCCAGCATATTTCAACGACTCGCAGCGACAAGCAACCAAGGACGCCGGCCTCATT 293635 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || || ||||| ||||| ||||| || || Sbjct 293634 GCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCGACTGCAGCAGCCATTGCCTACGGT 293575 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | || ||| || ||| | || || || ||| | ||||||||||| Sbjct 293574 CTCGACAAGAAGACTGAGGGCGAGCGCAATGTGCTCATCTTCGATCTTGGTGGTGGTACC 293515 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || |||||||| || || ||| |||| ||||| ||||| || || || | ||||| ||| Sbjct 293514 TTCGATGTATCGCTGCTCACAATTGAGGAGGGTATTTTCGAGGTCAAGTCCACTGCCGGT 293455 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || || || || || || || || ||| Sbjct 293454 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTTGTCAACCACTTCGTAAACGAA 293395 Query 349919 TTTAAG 349924 || ||| Sbjct 293394 TTCAAG 293389 >seq122 Length=1260175 Score = 109 bits (120), Expect = 2e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||| ||| || ||||| || || || Sbjct 552547 CATACCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTC 552606 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || || || | |||||||| ||||| Sbjct 552607 GGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGG 552666 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||||| ||||| |||||||| || || ||| || ||||| || || | || || | | Sbjct 552667 TGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCGGACGACT 552725 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 |||| || || |||| ||||| ||||| | ||| Sbjct 552726 CAACCTCGAGGGTAATGGTCTTGCCGGTGACTGT 552759 Score = 104 bits (114), Expect = 7e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || ||||| || ||||| || || || | Sbjct 552315 TTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGT 552374 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || ||||| || || || ||||| | Sbjct 552375 AGTCGGACAGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGT 552434 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || ||||| || || | || ||||| || || | || | || Sbjct 552435 CAGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTC-GCTG 552493 Query 140683 G-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 552494 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 552549 >seq64 Length=330449 Score = 98.7 bits (108), Expect = 3e-15 Identities = 243/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| | ||||| ||| | | | || ||||||||| | || || |||| | Sbjct 200290 CCAGAAGAGGTCTCATCCATGATCCTGGGCAAGATGAAGGAAGTCGCCGAGTCATACCTC 200349 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || |||| || || | || || | || || |||||||| || || || ||||||||| Sbjct 200350 GGCGAAAAGGTCACCAACGCAGTCGTCACAGTCCCAGCCTACTTCAACGACGCCCAGCGT 200409 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 | || || || || ||||||| || || || | || || || | | | || ||| Sbjct 200410 GCCGCTACCAAGGACGCTGGCACGATCGCCGGTCTCAACGTCCTCCGTGTCGTCAACGAA 200469 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || || || || | || || || || || || || ||| | ||| | || Sbjct 200470 CCTACCGCCGCTGCTCTCGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 200526 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | || | |||||||||||||| ||||| || | | || | || |||| Sbjct 200527 ATTGTCTACGACCTCGGTGGTGGTACTTTCGATGTCTCCATCTTGACTGTCGACCAGGGT 200586 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || ||| | ||||| || || || || ||||||||||| || || || || | Sbjct 200587 GTGTTCGAGGTTCAGGCAACGGCCGGGGACACCCATCTTGGTGGTGAGGACTTCGACCAG 200646 Query 349892 CGTCTCGT 349899 ||| |||| Sbjct 200647 CGTGTCGT 200654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251623769829