Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236685.1_202017-07- 28] 143 sequences; 29,909,557 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq50 140 5e-28 seq11 131 2e-25 >seq50 Length=820670 Score = 140 bits (154), Expect = 5e-28 Identities = 462/715 (65%), Gaps = 10/715 (1%) Strand=Plus/Minus Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 || || || || ||||||| || |||||| ||||| || || ||||||| | ||| Sbjct 774726 AACTCGTCACCGTAAACATCCGACAGACCAGGGCATTCGTTGGGGCACATCAGAGTCCAA 774667 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 || | | | || || | |||||||||||| || ||||| ||||| || | | Sbjct 774666 GTGCCGTTCTGTTCGACACGCTGCATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAA 774607 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 || || | | | |||||| ||||| ||||| ||| || | ||||| ||| | Sbjct 774606 TCGCGCGCACGAACTTCTTCCTTTCCATGGTTCTTGCGAAGGTCCATGAACTGCATGACG 774547 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762 || | |||||| || || || || || || | | |||| || || || || || ||||| Sbjct 774546 TCTGCATGCCACGGCTCAAGGTAGATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGG 774487 Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822 || | || | |||||||| ||||| |||| | |||||| | || ||||| ||||| Sbjct 774486 TCAACGTAACGAGCAGTGTTGTTATAGACTCGTAGCATTGGTACAAGACCGTTGGATGTG 774427 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 || ||||| || ||| || || || | || || || | || || || Sbjct 774426 CCGTTTGTGCCGCCAATGTATGAGCCTGTGGCCCTGATGTTGTGAACATGAAGACCAATA 774367 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || | || ||||| | ||||| || | || || ||||| || || || Sbjct 774366 CCGCCAGCGTTCTTGGAGATCATGGCACATATCTTGAGGGTATCGTAGATACCATCAATG 774307 Query 76943 CTATCATCCATCATG----TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || |||||| ||||| |||||| | ||||| || || || || Sbjct 774306 CTGTCATCCTTCATGGCCACCAAGAAGCAGGATGCTAG----CTGCGCCTGTGGGGTACC 774251 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATG 77057 ||| | || | ||| || || ||||| ||||| | || || | |||| ||||||| Sbjct 774250 AGCACTGAAAAGTGTTGGCGAAGCATGTGTGAAGTACTTCAACGACATGTAG-TTGTATG 774192 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | ||||| ||||||| || || |||||| || ||||| |||||||| | ||| | Sbjct 774191 TCTCAATCGCTGCTTCAATGTCTTCCCCATGAATGCCGACAGCCACACGCATGATCATCT 774132 Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177 | || |||| || || ||| | ||| | | | ||||||| |||| ||| | Sbjct 774131 GTTGCGGTCTCTCGGCAACCTTGCCGTCAATTCTGAGAAGGTATGATCGCTCCAGAGTCT 774072 Query 77178 TAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAG 77232 | || || || || | ||| ||||| | || || | ||| |||| || || Sbjct 774071 TGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCATAGACAATGGCCGAGTTCAG 774017 >seq11 Length=1109632 Score = 131 bits (144), Expect = 2e-25 Identities = 343/517 (66%), Gaps = 10/517 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || ||||||||||| | ||| || ||||| || || ||||| || ||||| || Sbjct 842774 TCGTTCGAGAATGTGAGCCCGGCCATGAGACCACGTTTCTTCAGCCAGAAGATAGCAGCA 842715 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 ||||||||||| ||||| || || || || || || ||||| | || | || | Sbjct 842714 AAAGATCCAGAGAAGAAGATACCCTCAACGGCGGCAAATGCAATGAGACGGAGGGCGAAT 842655 Query 46792 CTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | | || | | ||||| | ||||| |||||||| | | || || Sbjct 842654 GTCGAGTTCTTGTCAGAAATCCATCGCAACGCCCAGTCAGCCTTCCTGCGGATGCATGGG 842595 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || | || || ||||| || || | || | | || | | |||||||| Sbjct 842594 ATGTTGTCGATGGCATTGAACAGGTATGTTCGCTGCTTTGGCTCGCTGATGTATGTATCG 842535 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | ||| ||| | || || || ||||| || || ||||| || ||||| || Sbjct 842534 ATGAGAAGGGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 842475 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCAC 47027 |||| ||| || | ||||| ||||| | | || || || ||| | ||||| || || Sbjct 842474 CATCGTGCCTCCGGGATCTGCACCTCAGAGCTGAAGCGCTC-GACGAGGTTCTCGTTGAC 842416 Query 47028 TATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG-- 47085 || ||||| || || || ||||| | || ||| || || || ||| ||| Sbjct 842415 AATGCCATCGGATGCGGCGAAGAATGCGAGGACGTGTGAGATGAAGAATCGTTCGTCGTC 842356 Query 47086 GT--AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 || |||| | || |||||||| | || ||| || || | ||| | || |||||||||| Sbjct 842355 GTTGAGTC-GCTTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCCTCAGCTGTCC 842297 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||||||| ||||| || ||||| ||||| | |||||| Sbjct 842296 AGAATGAGGCCTCGGCCTTTTTGTACATTTGCCATAT 842260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933125629760