Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236725.1_202017-07- 28] 605 sequences; 31,102,602 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq465 109 5e-19 seq122 93.3 4e-14 >seq465 Length=198195 Score = 109 bits (120), Expect = 5e-19 Identities = 383/583 (66%), Gaps = 19/583 (3%) Strand=Plus/Plus Query 153732 TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCT 153791 |||||||| |||||||| ||||||||||| || ||| | ||||||||||| |||| Sbjct 129685 TGATTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGAATGAAAGGTGTGCCGGTCTCGGTC 129744 Query 153792 TGAATTTCTATAATAG--TACGCATCAATG-TGACCGCGGGCATTTGATCGCGAAACTGG 153848 || || | ||||| ||| ||| | ||| | || | | || || || | Sbjct 129745 TGCGCCTCGAGAATAGCATAC-CATATTTTCTGAGCACGAACCGTC--TCACGGCCCTTG 129801 Query 153849 CCCTTGTCT-TCGTAGTGTTTGTACCAGTATTCAAACTCATCACC--AAACGTATTGTTA 153905 || || ||| || || | | |||| | | ||||| ||||| |||| || Sbjct 129802 CC-TTCTCTCTCATAACGCTCGTACAGCTCCTTGAACTCGTCACCGTAAAC--ATCCGAC 129858 Query 153906 AGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGC 153965 || | || ||||||||||| |||||||| | ||| ||| || | || || || || Sbjct 129859 AGACCAGGGCATTCGTTGGGGCACATCAGAGTCCAAGTGCCGTTCTGTTCGACACGCTGC 129918 Query 153966 ATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTG 154025 ||||| | |||||||| ||| || |||| | || |||||||| ||||| | Sbjct 129919 ATAAAGAGATCGGGAATCCAGAGAGCGTAGAACAAATCGCGCGCACGAACTTCTTCCTTT 129978 Query 154026 CCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAA 154085 ||| ||| || | || | || | ||| | ||| ||||||||| || | ||| Sbjct 129979 CCATGGTTCTTGCGAAGGTCCATGAACTGCATGACGTCTGCATGCCACGGCTCAAGGTAG 130038 Query 154086 ACTGCTTGAGCGCCTTTACGC---TTGCCGCCCTGATTTACGTGACGCACCATATTGTTG 154142 | || ||| ||| |||| ||||| ||||| | |||| ||| | | ||||| Sbjct 130039 ATGGCAAAAGCACCTGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTA 130098 Query 154143 AAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCT 154201 | || || ||||| |||| |||||| ||| || |||||||| ||| | || Sbjct 130099 TAGACTCGTAGCATTGGTACAAGACCGTTGGATGTGCCGTTTGTGCCGCCAATGTATGAG 130158 Query 154202 GTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCAT 154261 || |||| | | | ||| || | | ||||||||||| ||| ||||||||||| Sbjct 130159 CCTGTGGCC-CTGATGTTGTGAACATGAAGACCAATACCGCCAGCGTTCTTGGAGATCAT 130217 Query 154262 GGCGCA-ATCGTTCAATGTGTTATAGATACCACGAATGCTATC 154303 ||| || ||| || | || | ||||||||| |||||| || Sbjct 130218 GGCACATATC-TTGAGGGTATCGTAGATACCATCAATGCTGTC 130259 >seq122 Length=383522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||||| || ||||| | || ||||| || || ||||| ||||| Sbjct 337840 TGGCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCC 337781 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | ||| | ||| || ||||| || || || |||| ||||| ||||| || || Sbjct 337780 GAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGT 337721 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| ||| || | | || | ||||||| | ||| Sbjct 337720 GGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATCGTGTCGGATGATTCC 337661 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | ||||||||||| | || || ||||| ||||||||| Sbjct 337660 ACTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCATA 337610 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || || ||||| || ||||| || ||| | Sbjct 337609 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 337550 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| || || ||| | ||||| || ||||| || || || Sbjct 337549 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 337490 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | |||||| ||| ||| ||| Sbjct 337489 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 337430 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||| | || || ||||| || |||||| Sbjct 337429 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATA 337382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060248516000