Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236725.1_202017-07-
28] 605 sequences; 31,102,602 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq144 138 1e-27
seq122 131 2e-25
seq594 123 2e-23
>seq144
Length=374410
Score = 138 bits (152), Expect = 1e-27
Identities = 111/134 (83%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || |||||||||||||||||||| |||||||||
Sbjct 43780 CCACCACGCAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 43839
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||||||||| |||| |||||| ||||||| |||
Sbjct 43840 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGA 43899
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||||||
Sbjct 43900 ATTCCCTCCTTGTC 43913
>seq122
Length=383522
Score = 131 bits (144), Expect = 2e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || |||||||||||||||||||| ||||||||
Sbjct 337381 CCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 337322
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| |||||||||||||| ||||| |||| ||| || ||||| | |||
Sbjct 337321 AGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGA 337262
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||| ||| ||| || |||| || | | | |||||| |||||| ||
Sbjct 337261 ATGCCTTCCTTATCCTGGATCTTGCTCTTC-ACATTGTCGATGGTGTCGGACGACTCAAC 337203
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || || || ||
Sbjct 337202 CTCGAGGGTAATGGTCTTGCCGGT 337179
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||| ||||| ||| ||||||||| ||||| || || ||
Sbjct 337838 GCCTCCACGGAGACGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGA 337779
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| || ||||||||||||||||| || || ||||| ||||||| ||
Sbjct 337778 AAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGG 337719
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| ||| ||| ||| | | | |||||| || ||||
Sbjct 337718 GATGCCCTCCTTGTCTTGGATCTTTGACTT-GACGTTGTCGATCGTGTCGGATGATTCCA 337660
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | || || || || || || || ||||| |||||||| |||||
Sbjct 337659 CTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 337611
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || || || ||||| ||||| ||||||||
Sbjct 337609 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 337550
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || |||||||||||||| || || ||||||||||| ||||| | ||
Sbjct 337549 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 337490
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||| || | || | |||||||| ||||| |
Sbjct 337489 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG--ATGGTGTCGCTGGACTCGA 337432
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 337431 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 337383
>seq594
Length=758675
Score = 123 bits (136), Expect = 2e-23
Identities = 142/189 (75%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 41667 TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726
||| | ||||||| ||||| ||||||||||||||||| | || || | |||||| || |
Sbjct 250120 TGCACACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAG 250061
Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT-- 41784
|||| |||| ||||| ||||||| || | | |||||||||| ||| || |||
Sbjct 250060 CGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGA 250001
Query 41785 CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844
|| | || | |||||||||||||| ||||| | ||| || || || || || || ||
Sbjct 250000 CATTGTCG--ATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGT 249943
Query 41845 CTTTACGAA 41853
|||||||||
Sbjct 249942 CTTTACGAA 249934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462300503826000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |