Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236745.1_202017-07-
28] 658 sequences; 37,414,534 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq144 307 1e-78
seq636 152 5e-32
seq476 123 3e-23
seq376 93.3 4e-14
>seq144
Length=510160
Score = 307 bits (340), Expect = 1e-78
Identities = 557/796 (70%), Gaps = 23/796 (3%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | |||||| | || |||
Sbjct 267621 ATATGGCAAATGTACAAAAAGGCCGAGGCCTCATTCTGGACAGCTGAGGAGATTGATCTG 267562
Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|| ||||| | | | ||||||| | ||| | |||||| |||| || ||||||
Sbjct 267561 TCGAAGGATCTCCA-CGACTGGAACAAGCGACTCAACGACGACGAACGATTCTTCATCTC 267503
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || |||||||| ||| ||||| ||||||||||| || ||||||||
Sbjct 267502 ACACGTCCTCGCATTCTTCGCCGCATCCGATGGCATTGTCAACGAGAACCTCGTCGAGCG 267443
Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| |||| | |||||||| | | ||||| || |||||||||||||| |||||| |
Sbjct 267442 CTTCAGCTCTG-AGGTGCAGATCCCGGAGGCACGATGCTTCTACGGCTTCCAGATCATGA 267384
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTC 116928
|||||||| | ||||| || | ||||| |||||||| || ||| | ||| |
Sbjct 267383 TGGAGAACATCCACTCCGAGACATATTCCCTTCTCATCGATACATACATCAGCGAGCCAA 267324
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
| | ||| | | |||| || |||||||| | || || ||| || ||||||
Sbjct 267323 AGCAGCGAACATAC--CTGTTCAATGCCATCGACAACATCCCATGCATCCGCAGGAAGGC 267266
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047
|| |||||| |||| ||||| | | || ||| || | |||| | || || | |
Sbjct 267265 TGACTGGGCGTTGCGATGGATTTCTGACA-AGAACTCGACATTCGCCCTCCGTCTCATTG 267207
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
| || || ||||| ||||| ||||||| || || ||| || || || || ||||| |
Sbjct 267206 CATTTGCCGCCGTTGAGGGTATCTTCTTCTCTGGATCTTTTGCTGCTATCTTCTGGCTGA 267147
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
||||||| || |||||| |||| || || ||| ||||||||||||||| | || ||||
Sbjct 267146 AGAAACGTGGTCTCATGGCCGGGCTCACATTCTCGAACGAGCTCATCTCCCGTGATGAGG 267087
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
| |||| ||||| ||||| | |||||| |||| || | | |||| | ||
Sbjct 267086 GCATGCACACAGACTTCGCCTGCCTTCTGTTCTCGCATCTGAAGAACAAGCCGAACCAGG 267027
Query 117228 CGCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286
| | || ||| | ||| ||||||| || ||| | ||||||||| ||| | || ||
Sbjct 267026 CCCTTGTGCAGAG-CATCATCACCGAGGCCGTCACGATCGAGCAGGAGTTCTTGACAGAC 266968
Query 117287 GCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345
|| || || ||| || ||||| | || | ||||| |||||||| || ||
Sbjct 266967 GCTCTTCC-ATGCAAGCTTCTGGGGATGAACGCTGGCCTCATGTCACAATACATTGAATT 266909
Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGCCCAA 117402
||||||||| | || ||| | ||| ||||| |||| | ||||||| | ||||
Sbjct 266908 CGTCGCCGATCGCCTACTGTT--AGC-ACTCGGCAACAAGAAGTTCTACAACGCCACCAA 266852
Query 117403 CCCGCTGGACTTTATG 117418
||| | ||||| |||
Sbjct 266851 CCCCTTCGACTTCATG 266836
>seq636
Length=763551
Score = 152 bits (168), Expect = 5e-32
Identities = 165/216 (76%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | ||
Sbjct 54671 ATGCAAATTTTCGTCAAGACACTCACCGGCAAGACCATCACACTCGAAGTGGAATCATCC 54612
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| ||| || | ||||| ||||||||||| |||||||
Sbjct 54611 GACACGATCGACAACG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATCCCACCGGACCA 54553
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| || || || || |||||
Sbjct 54552 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACACTTTCGGATTACAA 54493
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| |||| ||||| | ||| ||||
Sbjct 54492 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCG 54457
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| ||| |
Sbjct 54899 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 54840
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||| ||||| | ||||||
Sbjct 54839 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 54780
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | || ||||| ||||| || || | || || || ||||||||||
Sbjct 54779 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACTCTGTCCGACTACAAC 54720
Query 40870 ATCCAGAAGGA 40880
|||||||| ||
Sbjct 54719 ATCCAGAAAGA 54709
Score = 98.7 bits (108), Expect = 1e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||| ||| |||| || || | |||||| | | | | | |||
Sbjct 55105 TCACCGGCAAGACCATTACCCTCGAGGTTGAGTCGTCCGACACCATCGACAATGTGAAGA 55046
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| || | || || || ||||| || | ||||||||||| | || | ||| ||||
Sbjct 55045 GCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAACGCTTGATTTTCGCAGGCA 54986
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || |||| |||||||| |||||||||||| ||||||||| ||| || |
Sbjct 54985 AGCAGCTCGAGGACGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGAGCACTCTCC 54926
Query 40892 ATCTAGT 40898
|||| ||
Sbjct 54925 ATCTCGT 54919
>seq476
Length=243870
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
|||||||| || ||||| ||||| |||||||| |||| ||||| | | ||||| | |
Sbjct 53996 TTCGTAAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTCGAGTCGAGCGACACCATC 53937
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| ||||| ||||| |||||||||| || |
Sbjct 53936 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTTTG 53877
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || ||| |||| || | ||||||||| |||||||||||||||||||
Sbjct 53876 ATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAG 53817
Query 40879 G 40879
|
Sbjct 53816 G 53816
>seq376
Length=291155
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || || |||||||||| || | |||| ||| ||||| ||||| ||
Sbjct 12011 GACAAGGAGGGAATTCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 11952
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | ||||||||| |||||||||||| ||||||||| ||| || || || ||
Sbjct 11951 GATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGAGCACCCTCCACCTCGT 11896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515214962322080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |