Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236745.1_202017-07-
28] 658 sequences; 37,414,534 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq636 140 8e-28
seq476 129 1e-24
seq144 87.8 4e-12
>seq636
Length=763551
Score = 140 bits (154), Expect = 8e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | || | || |||||| ||||| || |||||||
Sbjct 54673 CCACCACGGAGACGAAGCACCAAGTGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAC 54732
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || ||||| || ||||| ||||| || | ||||
Sbjct 54733 AGAGTACGACCATCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCAGGTGGG 54792
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| |||| || || || || || | ||||| || || ||
Sbjct 54793 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGCTGGACTCGACC 54852
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 54853 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 54899
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || || | || || || ||||| || | || || || ||||||
Sbjct 54481 TCCTTCTGGATGTTGTAATCCGAAAGTGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 54540
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || |||||| || || || || ||||| || | || |||||
Sbjct 54541 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTG 54600
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||||| |||||||| ||||| ||||| ||||| || |||||||||
Sbjct 54601 TCGATCGTGTCGGATGATTCCACTTCGAGTGTGATGGTCTTGCCGGTGAGTGTCTTGACG 54660
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 54661 AAAATTTGCAT 54671
Score = 109 bits (120), Expect = 1e-18
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || |||||||| | ||||| || || || || || |||||||
Sbjct 54901 CCACCACGAAGACGGAGGACGAGATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 54960
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || |||||||| |||| || || || | |||
Sbjct 54961 AGGGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGTTGCTGGTCAGGTGGA 55020
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| ||||||||||| || ||| ||||| || || || | ||| ||| || ||
Sbjct 55021 ATGCCTTCCTTATCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCGGACGACTCAAC 55079
Query 288426 TTCGAGCGTGATCGTCTTCCCGGT 288449
||||| || || ||||| |||||
Sbjct 55080 CTCGAGGGTAATGGTCTTGCCGGT 55103
>seq476
Length=243870
Score = 129 bits (142), Expect = 1e-24
Identities = 138/180 (77%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| ||| ||||| || || || || || ||||| |||||||||
Sbjct 53818 TTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATC 53877
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404
| |||||| || ||||||||| || || |||||||| || ||| || || || ||
Sbjct 53878 AAACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTC 53936
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | |||||||| || || ||||||||||| ||||| || || || ||||| |||||
Sbjct 53937 GATGGTGTCGCTCGACTCGACCTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTTACGAA 53996
>seq144
Length=510160
Score = 87.8 bits (96), Expect = 4e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 269155 GGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG 269214
|| ||||| || | |||||| ||||| || |||||||| || ||||| | |
Sbjct 266946 GGGATGAACGCTGGCCTCATGTCACAATACATTGAATTCGTCGCCGATCGCCTACTGTTA 266887
Query 269215 GCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATT 269274
|||||||| | |||| | ||||| | | || ||||||| ||| ||||| |||
Sbjct 266886 GCACTCGGCAACAAGAAGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATT 266827
Query 269275 TCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGT 269334
||||| | || ||||| ||||||||||| |||||||| |||| || || |||||
Sbjct 266826 TCGCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGAGTACCAGAAGGCTGGT 266767
Query 269335 GTAATG 269340
|| |||
Sbjct 266766 GTCATG 266761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179644454776124
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |