Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236745.1_202017-07- 28] 658 sequences; 37,414,534 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 4e-15 seq629 84.2 3e-11 >seq8 Length=58653 Score = 96.9 bits (106), Expect = 4e-15 Identities = 117/156 (75%), Gaps = 9/156 (6%) Strand=Plus/Minus Query 31937 GGACTTGAACCTCCACGTCGCAAGGACACTGGAACCTAAACCCAGCGCGTCTACCAATTC 31996 ||||||||||| ||||||| || ||| || || ||||| | || |||||| ||||||| Sbjct 27517 GGACTTGAACCCCCACGTC--AAAGACGCTAGATCCTAAGTCTAGTGCGTCTGCCAATTC 27460 Query 31997 CGCCATAC-CG-----ACTGGCGACTCAAGTAGGATTCGAACCTACGACCGACTGCTTAG 32050 ||||| || || ||| || ||| | ||| |||||||| |||| ||| ||| Sbjct 27459 CGCCACACGCGCATATGATGGTGAGTCATGAAGGGCTCGAACCTTCGACACCCTGATTAA 27400 Query 32051 AAGGCAGTTGCTCTATCCAGCTGAGCTATTGAGTCA 32086 ||| ||| ||||||| ||| |||||||| ||| ||| Sbjct 27399 AAGTCAGGTGCTCTA-CCAACTGAGCTAATGACTCA 27365 >seq629 Length=126711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082 ||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 52430 GGATTCGAACCCCCGACCGACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGCTACTGA 52371 Query 32083 GTCATG 32088 | |||| Sbjct 52370 GACATG 52365 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 32023 GGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGA 32082 ||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||| ||| Sbjct 60032 GGATTCGAACCCCCGACCGACGGCTTAGAAGGCCGTTGCTCTATCCTGCTGAGCTACTGA 60091 Query 32083 GTCA 32086 | || Sbjct 60092 GACA 60095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622119683023520