Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dothistroma_20septosporum_20[genbank_20GCA_5F002236745.1_202017-07- 28] 658 sequences; 37,414,534 total letters Query= NC_029104.1 Length=54312 Score E Sequences producing significant alignments: (Bits) Value seq133 107 7e-19 seq233 86.0 2e-12 >seq133 Length=520896 Score = 107 bits (118), Expect = 7e-19 Identities = 379/589 (64%), Gaps = 5/589 (1%) Strand=Plus/Plus Query 10445 AGCAGTATCAAGCGATGGGAGCTATCCAAAATTTTGATGCTCAAAAGGACATTATTGTTT 10504 ||||| ||| | || || || || |||||||||||| | ||| || || | |||| Sbjct 411130 AGCAGCTTCAGGATATCGGGGCGATTCAAAATTTTGATTCCAAAACAGATATCACTGTTG 411189 Query 10505 CTCCAGGTAATGATAGTGATTCATTGCTAACTGAGGGGTATATCCAACCTGTCGATGCCA 10564 |||| || ||||| | || | || | ||| | |||||||||| ||| || Sbjct 411190 CTCCGGGCAATGAAACCGACAGTATTCTGATCGAGATTCAGGTCCAACCTGTGGATTCCG 411249 Query 10565 TGGAGAAAAACTACTTAAAGGCGGTGGTGCGATAA-ATGGCTTTTTTAAAATATGAAGAC 10623 | || ||| || | || | | |||| ||| ||| | ||||| ||| ||| Sbjct 411250 TTGAAAAAGTATATATGAAAGTGAAGGTGGTTTAAGATGACATTTTTGAAAGCAAGCGAC 411309 Query 10624 ACGATAAATGGTCAGGAAGGACGTGCCTACGCCACGATTAACGGTCGTGTAGAGGAAATG 10683 ||||| || |||||||| || || ||||| |||||||| || | || |||||| Sbjct 411310 ACGATCTCCGGCCAGGAAGGCCGCGCATACGCAACGATTAATGGACAGACGGAAGAAATG 411369 Query 10684 TTCTGGCTTAAAAAGTTCGAGGCAAAGGTAGAAAAGAACAAAAA--AGAAGGAAAGACAC 10741 |||| | || | | | || |||| ||| || | |||||||| ||| | || || Sbjct 411370 TTCTATGTGAAGACGCTGGAAGCAACGGTGGAGA--AACAAAAAGCAGAGGTCAAAACGT 411427 Query 10742 TAAACAGACGCGGTACCCAGCATAAGGCAATGGGATGGAAAGGTACAGGCAGCATGACCA 10801 | | |||||| ||||| || |||| || ||| ||| | || |||||| | Sbjct 411428 TGGGTCGCCGCGGTGTACAGCACAAAGCAACCGGTTGGTCCGGTTCGGGTTCCATGACAA 411487 Query 10802 TCTACTATGTGACCACCCTTTTCCGCCAACTTATGCTCGATTACATGAAGACAGGTAAAG 10861 ||| |||| || ||| |||||| | || ||||| | |||||| ||| ||| | Sbjct 411488 TCTTCTATACCACTTCCCGTTTCCGTGAGCTGATGCTACAGTACATGCAGAATGGTGTGG 411547 Query 10862 ACATTTACTTTGATGTTCAGATCACAAATGAAGATCCGACATCTAGTGTTGGAAAGCAAA 10921 ||| ||||| || || | | || || |||||||| | |||| |||| || || | Sbjct 411548 ACACGTACTTCGACATTGAAGTGACCAACGAAGATCCTTCCTCTACGATTGGCAAACAGA 411607 Query 10922 CTGTTGTCATCAAAGGAATTAACCTTGATGGTATTACAATGGCTCTTTTGGACATAGATA 10981 | || | ||||||| | || || || || | | ||||| |||| | || Sbjct 411608 CAGTAACCCTCAAAGGTGTCAATCTGGACAGTGTAATCATGGCATCCCTGGATACCGAGG 411667 Query 10982 GTGAGGACATGGAAGAGGAGATTAGCTTCACTTGGCAAGATGCTGATAT 11030 ||||| |||| || || | ||||| || | |||||| ||||| Sbjct 411668 CTGAGGCGTTGGAGGAAGAAGTGAGCTTTACCTTTGAAGATGTCGATAT 411716 >seq233 Length=416314 Score = 86.0 bits (94), Expect = 2e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 38374 CCGTTTTTCTTTTCGAACTCATCAATATGGTGTTCGATAAGATGCTCAATTTGCATAGCG 38433 || || | |||||| || || |||||||| | || || | || ||||||||||| ||| Sbjct 111838 CCTTTCTCCTTTTCAAAGTCTTCAATATGCTTCTCAATCAAATATTCAATTTGCATCGCG 111897 Query 38434 ATTGATCGTTTGTTTTTATCAGCAATATATTTAATCTTTTCGAAGTTAGTTTCTTGTAAA 38493 | || ||||||||||| ||||| || |||||| || || || || |||||| || Sbjct 111898 AGGGACCGTTTGTTTTTGTCAGCGATCACTTTAATTTTCTCAAAATTCGTTTCTCTTAGC 111957 Query 38494 CGCAATGTAAAAGGACGTTTATCAGTAGCCAT 38525 | |||||| | |||||| |||||||| Sbjct 111958 CTAGGTGTAAAGACTCTTTTATCTGTAGCCAT 111989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173675442932904